Cten013932.1
Basic Information
- Insect
- Chironomus tentans
- Gene Symbol
- Zbtb41
- Assembly
- GCA_963573255.1
- Location
- OY754304.1:39644079-39645583[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.73 38 5.2 1.0 1 12 37 48 37 57 0.85 2 10 8.6e-05 0.0045 17.6 3.5 1 23 98 120 98 120 0.98 3 10 0.0047 0.25 12.1 2.0 1 23 155 177 155 177 0.98 4 10 0.00013 0.007 17.0 0.4 3 23 200 220 198 220 0.95 5 10 7.3e-05 0.0039 17.8 3.0 1 23 244 266 244 266 0.97 6 10 0.00031 0.016 15.8 2.8 1 23 272 295 272 295 0.97 7 10 0.00059 0.031 14.9 1.9 1 23 301 325 301 325 0.96 8 10 1.9e-06 0.0001 22.7 0.8 1 23 331 353 331 353 0.99 9 10 1.3e-05 0.00069 20.1 0.7 1 23 357 379 357 379 0.98 10 10 8.2e-05 0.0043 17.6 0.2 2 23 389 411 388 411 0.96
Sequence Information
- Coding Sequence
- atggaaacGGATAGTCAGGtCATTGTAGAGGAATTATACGATTGTGAATcggatttaattgaaaaagttgaaacaGACGATGATTTCATTGTTAAGGAACAACAAATCTTTCAGTGTAGCTCGTGTAATTTTAGTTTTACGGATGTAAATGAACATCTTCAAAGGTATCATGAcataaatgaacaaattgTGCATcaaaatgaggaagaagaaatggcTTTAGAGGAACTGGATGTTGCATCAGACAATGAAATTAGTTTAGCGCCAATTGTCAAGAACGAGGATGGAAAGTACGAATGTAATGAATGTCAGAAGTCCTTTAAAAACTACAAACGATTTGTCACTCACTTAAAGAGTCACAACAGCTTCATGGTCGAAGATTTTAGTGAATTAGAGCAAAATGTCAAGATTGAATACAAACATAAGGAATATGTGCAAATTGAAGGAACTGACGGAACAGTTTTCCGCTGTAATCATTGTAATGCTGATTTTGAGTCAAGGAAGCGCCTTCTCTTACATCTATCGATCCACAAAAATGTAACGGAAGCTCAAAgtaaggaaaaactttttgcaaaGCAATCAACAGACATCATTAACTGTCAAATATGCAATAAGTCATTCAGTAACAAGTTAGAGTTTGAATTACATGTACAAGCACACGACGAAAATAGCCCAAGCACATCGAAGGCCTACGTTCCAAAAAAGTCTGGAGTTGCTCAAAAAGGCGTTCATCCTTGCCAATATTGTGGAAAGATCTTTAAGAGACCACACGAAAAAGTTAAGCATGAACGCATCCACAGCGGAGTTAAACCATACACATGTGATATATGTGGTAAGCAATTTCGAGTGACTTATTGCCTTTCTCTACACAAACGGAATGTCCATTCAGACGACAGACCTTACATTTGCACTTTTCCTGGATGTAATAAGCGTTTTAAGGCACAAAGTGTCTACAATCATCACATAAACACTCACAGTGATGAACGCAAGTTTCAATGTCCATTCTGTCCTAAAACTTTCAAGACGTCAGTCCAACTTGCTGGACATAAAAATACTCACACGAAGCCATTCTCATGTCAAATCTGCAAGCGTCCATTTTCATCACTTTATGCTGTTAAAAATCACATGGAAACTCATAATAATCAAGACTCAAACTTGAAGCTGACGTGTAAGGTCTGTGGTGCTCAATATGCTCGTTCCTTTGCATTAAAAGATCACATGAAATCAGTTCATCCTGAGATGGATATAGAGGTTGAGGAATACATTATAGAAACAGACATGGATGGAACAAATGGAGAGGATAATGAACTTTATTCAGTTGTCATGTCCACAGAATAG
- Protein Sequence
- METDSQVIVEELYDCESDLIEKVETDDDFIVKEQQIFQCSSCNFSFTDVNEHLQRYHDINEQIVHQNEEEEMALEELDVASDNEISLAPIVKNEDGKYECNECQKSFKNYKRFVTHLKSHNSFMVEDFSELEQNVKIEYKHKEYVQIEGTDGTVFRCNHCNADFESRKRLLLHLSIHKNVTEAQSKEKLFAKQSTDIINCQICNKSFSNKLEFELHVQAHDENSPSTSKAYVPKKSGVAQKGVHPCQYCGKIFKRPHEKVKHERIHSGVKPYTCDICGKQFRVTYCLSLHKRNVHSDDRPYICTFPGCNKRFKAQSVYNHHINTHSDERKFQCPFCPKTFKTSVQLAGHKNTHTKPFSCQICKRPFSSLYAVKNHMETHNNQDSNLKLTCKVCGAQYARSFALKDHMKSVHPEMDIEVEEYIIETDMDGTNGEDNELYSVVMSTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00319939;
- 90% Identity
- iTF_00320879;
- 80% Identity
- iTF_00320879;