Cten002924.1
Basic Information
- Insect
- Chironomus tentans
- Gene Symbol
- -
- Assembly
- GCA_963573255.1
- Location
- OY754302.1:32242696-32245530[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0018 0.094 13.4 3.9 1 23 162 184 162 184 0.97 2 11 0.016 0.83 10.4 12.9 1 23 190 212 190 212 0.96 3 11 0.0001 0.0053 17.3 7.9 1 23 218 240 218 240 0.99 4 11 0.00051 0.027 15.1 2.3 1 23 246 268 246 268 0.95 5 11 5.2e-05 0.0027 18.2 0.9 1 23 274 296 274 296 0.96 6 11 2.9e-05 0.0015 19.1 0.2 1 23 302 324 302 324 0.96 7 11 0.00032 0.017 15.8 2.5 1 23 329 351 329 351 0.98 8 11 0.0027 0.14 12.8 0.0 1 23 357 380 357 380 0.94 9 11 0.00046 0.024 15.3 0.1 1 23 494 516 494 516 0.97 10 11 0.0038 0.2 12.4 4.5 1 23 651 673 651 673 0.95 11 11 4.3e-05 0.0023 18.5 2.0 1 23 683 705 683 705 0.97
Sequence Information
- Coding Sequence
- ATGATAAATCGGCGAATGATTCTGGTGAGTGACGGCCAAAATTCTGGTCAGCATAGAGTCATCACTTCCAGTGGCACATCGGGTGGAAATACAATTCTTGATGGAAAGACCCAAACTGTGTACACGACCAGTGATAAAACGACACATTTTATGTCTCCAATTGGTTCCCTTCAACTAACGGCCGAAGAATGCAACGAAATTCTCATGAAAAGAGCCGTTGCGGCTGTTCAAAATCAACAAGCCATCACAACTACAGCATCTGATGTCCACAATGCTCCCATATCAATTCAGGTCCAGAAAGTATTACAGACTTTAGAGGATAGTGAAGAGCAACAATTAACACACTGCAAAATGGAACCGAATATGAGTTCATCACCAAAACTTGAAACTATTGAAATTGTCCATTTCGAGACGGCAGAAGATTCGAAGCCAATTATTCAGAAAACGAGGAAAAATGATCCAGGAAGTAATAAGGAACGTCCGTATGCTTGTGAGCAGTGCggtaaaacatttttattgaaacatCACTTAACAACGCATGCAAGATCACATACAGGCGAGCGTCCTCATGTTTGTCCTCACTGCCATAAAGATTTCAGTCACAAGCACTGTTTAAATACACATTTATTGCTTCATACCACCGAGCGTCCGTATCAATGTGGCGAATGTAAGAAGTGCTTCACACTAAAGCATCATTTATTAACGCATCTTAGGGTTCACACACGTGATCGTCCGTTCGTGTGCCAAGAATGTGGCCGTTCATTTCCACTGAAACGTCATTTAGTGACACATAGTAAATTTCATGCCGGCGAAAGGCCATTCATTTGCGAGgATTGCGGTGAGAGTTTCGCACAGAAGGAGCATTTGGATATGCATTCGAGATTCCATGGATCCATTAATCCCTTTGCCTGTAATGATTGTGGAGCAACATTTGCTCgtaaatttcagcttattaaTCATGGAAAGTTGCATGGTCGCGTACCACATTCGTGTACAGTCTGTGGAAGAGAATTCCTTCAGAAGCGTACATTAGCAACTCATATGAAAACACATACAGGTGAAGCTAGCTTCCCATGCTTAGCTTGTGGAGAAGGATTTGCATCAAAAGCAGAACTGAATGCACATAATCGATTAGTGCACGGAGGTCTTAATCCCAATGCACCAAATACGACGATTGTTACAAATAAAACTGCTACAGTTattcaacagcaacaacaaaatcaaGCTCAACAGCAAGCAGCCCAACAAGCGGCACAGCAGCAAGCTGCTCAACAACAAGCTGCTGCCCAGCAAGCAGCAAATGCTCAAGTACAACATCAAGttcagcaacagcaacaagttcagcagcaacagcaagttcagcagcagcagcaacaaattGAGGTTCAGCATTTACAGCAACAAGCACAAACGGTAACCGTTGTTGGAAATCCTAATATATTAACAACAATAAGTGGAGAAACTCCACCTCGTTTGCAGTATGCCTGTCGTGAATGTGGAAGTGTGTTCAATAGCCGCGAAGGTCTTGCCTTACATTTACGGCTTCATTCGGGAGATAAGAGTCTTATTAACGATTTATGCGCCCTTACTGCCTCCATTCCTGGCCATCTTTTTCAAGGTGTTAATCAAATTAATCTTCCTTCGGGTACAACATTCGTTACTACACAACAACCAGGAGCCTCTTCATCTCCAGTGCCGGTCCAAATCATTACGTCTAGTGGCGAGGTAGTGAATCAAATCCTTCAGAGTCCACAGCATACTCAGCAACATCAACAAATACAAATTCAGTCGCAAGCACAACCTCAAGTTAAACAGCAAATTGTCCAACAACAAACTGTTCAAGTAACAcatcaacaacagcagcagcagcaacaacaaaatcagAATCAGCAAGTTCAGCAAGCAACCGTTGTTCAAATCACATCACCGCCACAACAAAAGGCTAAAACACACTTTTGTCAATATTGTGGGAAGAGCTTCGTTGCTAAACACGGTCTCATGTTGCACAATAAGCGTCATCCAGATGGAAGTTGTACTCTGCGTTCACACGTTTGTCCAGAATGCGGGAAAGCCTTCCTCCAAAAGAATCATCTCATTCTTCATCAACGTCAGCATTTAGAACAAAATCGTGGCGGAAAATCCAATCAGCATCAACAGCAACAGCTTGAGCAGCAACAAAATCAGGTACAGCAGAATGGAGACCAGCAAGGCCAACAACAAATAACAATTCAACAATCAGGGCAACAAGCTCAATCGCAAGGCGGCCAACAAATTCAATTGGCAACACGAAATGTACTAATGCCAAATCAGCAAGTCTTGCAAGTATTACCTGACGGTGGGACATGGGTAAAATATGAGATAATACAGTCCGATCAAATGGAATAG
- Protein Sequence
- MINRRMILVSDGQNSGQHRVITSSGTSGGNTILDGKTQTVYTTSDKTTHFMSPIGSLQLTAEECNEILMKRAVAAVQNQQAITTTASDVHNAPISIQVQKVLQTLEDSEEQQLTHCKMEPNMSSSPKLETIEIVHFETAEDSKPIIQKTRKNDPGSNKERPYACEQCGKTFLLKHHLTTHARSHTGERPHVCPHCHKDFSHKHCLNTHLLLHTTERPYQCGECKKCFTLKHHLLTHLRVHTRDRPFVCQECGRSFPLKRHLVTHSKFHAGERPFICEDCGESFAQKEHLDMHSRFHGSINPFACNDCGATFARKFQLINHGKLHGRVPHSCTVCGREFLQKRTLATHMKTHTGEASFPCLACGEGFASKAELNAHNRLVHGGLNPNAPNTTIVTNKTATVIQQQQQNQAQQQAAQQAAQQQAAQQQAAAQQAANAQVQHQVQQQQQVQQQQQVQQQQQQIEVQHLQQQAQTVTVVGNPNILTTISGETPPRLQYACRECGSVFNSREGLALHLRLHSGDKSLINDLCALTASIPGHLFQGVNQINLPSGTTFVTTQQPGASSSPVPVQIITSSGEVVNQILQSPQHTQQHQQIQIQSQAQPQVKQQIVQQQTVQVTHQQQQQQQQQNQNQQVQQATVVQITSPPQQKAKTHFCQYCGKSFVAKHGLMLHNKRHPDGSCTLRSHVCPECGKAFLQKNHLILHQRQHLEQNRGGKSNQHQQQQLEQQQNQVQQNGDQQGQQQITIQQSGQQAQSQGGQQIQLATRNVLMPNQQVLQVLPDGGTWVKYEIIQSDQME
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00346937;
- 90% Identity
- iTF_00319933;
- 80% Identity
- -