Cten016322.1
Basic Information
- Insect
- Chironomus tentans
- Gene Symbol
- -
- Assembly
- GCA_963573255.1
- Location
- OY754305.1:10053058-10056157[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00019 0.0099 16.5 0.8 2 23 106 128 105 128 0.96 2 15 4e-05 0.0021 18.6 0.8 3 23 139 160 137 160 0.96 3 15 0.048 2.5 8.9 0.1 7 23 174 190 168 190 0.90 4 15 0.71 38 5.2 0.1 2 23 195 216 194 216 0.91 5 15 9.5e-08 5e-06 26.9 3.8 1 23 222 244 222 244 0.98 6 15 0.018 0.95 10.3 4.3 1 23 248 271 248 271 0.94 7 15 3.1e-06 0.00016 22.1 0.3 2 23 278 299 278 299 0.97 8 15 6.9 3.7e+02 2.1 6.7 1 23 307 329 307 329 0.95 9 15 1.7 89 4.0 0.2 2 12 344 354 344 359 0.90 10 15 0.026 1.4 9.8 2.3 2 23 415 437 414 437 0.96 11 15 0.0058 0.31 11.8 1.7 3 23 471 495 470 495 0.87 12 15 0.0039 0.21 12.3 1.4 1 23 527 549 527 549 0.99 13 15 5.6e-06 0.00029 21.3 2.0 1 23 553 576 553 576 0.92 14 15 1.1e-05 0.00061 20.3 1.8 1 20 582 601 582 604 0.93 15 15 0.00022 0.012 16.3 1.6 1 23 613 635 613 635 0.98
Sequence Information
- Coding Sequence
- atgtcaagaaaaatATCTGATTACTTTAAGCTGAAGCCAAAGAGTgaagataaagaagaaatttacaataaatgtgaaaaaactCATGAAGTTGgaccaaaatttattaaacaagaGTCATGTGACAACGTTATTCAAGGCAATTGCTTAAGATATTCTCAAAATGagacaaattttatggaaaaaattattaaaagtgcAGAAAAGGTTCAAGCAAGTGAGTCAAAAATAACAGGAAACGTCAAAAAGGAGCCAGATCAGGATTTTGTGATTCGAATACCAAACAATATTGATCAAGAATCCAAAAATGACAACAAATGCAAATATTGTggcaaaatatttacagacAACACATACATCTACGACCACGTGAAACGTGTCCACAGCGACGAAATCAAAGActctttaattaattgcaatttatGTGGTGCAAGtttcttcacaaaaaattggttaactCAGCACATGAAGAGAAGTCATGCTGATGGTAAagttgaaatgtttatttgcGATTTAGATGGTAAGATACTCACAAATAAGGTATACCTAAGAAGTCATATGAGAAAGCATTCACAAAAAGTGGAATGTAAAATTTGCAatgtggaattaaaaatttggagCTTGAGAAATCACATGAATTCAATTCATGGAAATAAAGGACCGTTTCAGtgtaaaatttgtgataagagCTTCAAAGATAACCACAATCTTACCAGACATGAAAAGATTCACGACAAGAAGTTCGAATGTATAATTTGTGACAAGAAATTTGCACATGAAAGGGAAGTAAAAAGACATCAAAAGCattttcatgagaatttaAAGAAGGCAACTTGTGATGTTTGTGGAAAAATGTTTGCTGATAAAGCAAACTTGACGCAGCACTCAAAAGTTCATGATAAAAATCGCCCAAAACCATTCAAATGCCATCGATGTGACCATGCAGCAACCACAATGCAACgattcaaaaaacatttaacatttcatgaaaatcaagACAAAAGATTTGCAGCCATGAAAAATCCTGAAAAATGTGATCAATGTCCAATGATGtTTAAACGTGAACCAGAACAATTTAGATCCAATAAGGAAGCATTTGTGGATGTTGATAAAATTGCACCTGAAAATAATGAaggcaaaataaatttgaacataaaaacTGAAGTAAGTCAAGAATTTGTCATCAATTTACCAGTCAAAAATGAGTCAACGTCCATCAATTCATCAGAAAAGTCAGCAATAAGTTGTCAGTTTTGTAAAAAGAGTTTTGGAAGCAATTTTGCCAAGAATCAACACTTGAAGAAGTCGCATTCATCTGAGCTTGATTTTAAGGATATTTGTGACTTAAAATTGCCTCAAAAAACAGCTGAACAAGAACATCAAACTCCAAAGTCTATTAACAGTGGAACATGCAATTATGAATGTGATTTCGATggcaaaacattcaaaaacaaaGCATGTCTGTCAAGGCACTTGATGGTTCACTTACCGACTACAAAATGCCACATTTGTCATGTCGAGCTCAAAGTCAGCTACCTTCACTATCACATTAAGACATATCACGAAACAGACCAAAAATACCAGTGTAGAATTTGctcaatgattttaaaaacacaaaaatatttaaaaggtCACGAAAAAACTCACAACAAGAATTTCCAGTGTAATATTTGCGATAGAAAGTTCACAActccattttatttaaaaagacataaaacGGAAATTCATGAGAATCCAAGAAGCTACGAATGTAACGTCTGCAACAAGAAATTCAACTATCAATCATCATTAATGAAACATCAGCCACGACATAAAGACAAGACCATCTTCAAGACCTTTGAATGTGAACGATGTGGCTTTAAAGTTGAGaatagaaataatttgaaaaaacatcaaaaacttcATGAAATGAAGGATAAAAAGTTTGcggaaatgaaaaatccactaaaatgtgaaaaatgtccAACACTTTGTAATACACACTTAAATGAAGAAAGAGGGAAGTAA
- Protein Sequence
- MSRKISDYFKLKPKSEDKEEIYNKCEKTHEVGPKFIKQESCDNVIQGNCLRYSQNETNFMEKIIKSAEKVQASESKITGNVKKEPDQDFVIRIPNNIDQESKNDNKCKYCGKIFTDNTYIYDHVKRVHSDEIKDSLINCNLCGASFFTKNWLTQHMKRSHADGKVEMFICDLDGKILTNKVYLRSHMRKHSQKVECKICNVELKIWSLRNHMNSIHGNKGPFQCKICDKSFKDNHNLTRHEKIHDKKFECIICDKKFAHEREVKRHQKHFHENLKKATCDVCGKMFADKANLTQHSKVHDKNRPKPFKCHRCDHAATTMQRFKKHLTFHENQDKRFAAMKNPEKCDQCPMMFKREPEQFRSNKEAFVDVDKIAPENNEGKINLNIKTEVSQEFVINLPVKNESTSINSSEKSAISCQFCKKSFGSNFAKNQHLKKSHSSELDFKDICDLKLPQKTAEQEHQTPKSINSGTCNYECDFDGKTFKNKACLSRHLMVHLPTTKCHICHVELKVSYLHYHIKTYHETDQKYQCRICSMILKTQKYLKGHEKTHNKNFQCNICDRKFTTPFYLKRHKTEIHENPRSYECNVCNKKFNYQSSLMKHQPRHKDKTIFKTFECERCGFKVENRNNLKKHQKLHEMKDKKFAEMKNPLKCEKCPTLCNTHLNEERGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -