Basic Information

Insect: Chironomus tentans
Gene Symbol: -
Assembly: GCA_963573255.1
Location: OY754303.1:9673706-9675642[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 4e-05 0.0021 18.6 7.5 1 23 208 230 208 230 0.97

2 9 9.9e-06 0.00052 20.5 3.5 2 23 237 259 236 259 0.96

3 9 0.00075 0.039 14.6 1.7 1 23 265 290 265 290 0.92

4 9 1.5e-06 8.1e-05 23.1 4.1 3 23 300 320 299 320 0.97

5 9 2.2e-06 0.00012 22.5 0.4 1 23 337 359 337 359 0.96

6 9 1.3e-05 0.00071 20.1 0.8 1 23 365 387 365 387 0.98

7 9 1.8e-06 9.4e-05 22.9 0.8 3 23 395 415 393 415 0.96

8 9 7.4e-07 3.9e-05 24.0 1.3 1 23 421 443 421 443 0.99

9 9 0.00042 0.022 15.4 2.0 1 23 448 471 448 471 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	4e-05	0.0021	18.6	7.5	1	23	208	230	208	230	0.97
2	9	9.9e-06	0.00052	20.5	3.5	2	23	237	259	236	259	0.96
3	9	0.00075	0.039	14.6	1.7	1	23	265	290	265	290	0.92
4	9	1.5e-06	8.1e-05	23.1	4.1	3	23	300	320	299	320	0.97
5	9	2.2e-06	0.00012	22.5	0.4	1	23	337	359	337	359	0.96
6	9	1.3e-05	0.00071	20.1	0.8	1	23	365	387	365	387	0.98
7	9	1.8e-06	9.4e-05	22.9	0.8	3	23	395	415	393	415	0.96
8	9	7.4e-07	3.9e-05	24.0	1.3	1	23	421	443	421	443	0.99
9	9	0.00042	0.022	15.4	2.0	1	23	448	471	448	471	0.98

Sequence Information

Coding Sequence: atggaaaCTAAATTAACCGTGCAATTGGAGGAAGTTTCAATTGAAAAGGTGTGTAGGACATGTCTAAATACAGCAGGCGACGATACAATGATCTCTATATATGATATCTGCGACGAGGAACTAGcgaataaacaaaatttcttcgaattaattaatgaaacatTTGGAAGAATTATGCCTCTTACACACAATTTACCAAATCGTTTATGTAGCGAATGTCAAGTGATGATAAAGAAATGTTGTGAATTTAGGAAGCAATGCTTAAATTCTACACAGATATTAACGGAAGCGCTGGAAAGTGACATCAATATCTTTGGAGTAGTAGATAAATGTACACAAACAGAGCCACAAATCATCCAGATGCACTTTGATGATGAGAATTTCGACACGATTAATATGCAGGAAGACGGGATGTTTGTGAATCAATCAAATCAATGGTCTGTAATACATCCAGTAATCTCACAAGAATCTATTATACAACTTAAGGTAGAACACGATGATAATAATGACAGTTGCATTGTCGACGAGCACATAGAAGAACATAGATCTGAAGATACAAAAGAATTTGACTATGATAATCCACTAAATGAACAAGACGACGAAGATGAGAGGAAGCAAAATCATCATTGCGACATTTGTAATAAAACCTTCATTAGATTAACTCATTTAAAGCGGCATCAGTTGTCACATAATGAAGGTAGATCGCTACAATGTACAGTATGCAGCAAAGGATTTACCAGATTAGACCATTTAAACCATCATATGCTTAGTAACCACTCAGAATCTAAACCATTTCATTGCGACGTACCTGACTGTAAGAAAGGATTTATAAAAGAAGaacATTTGAAGAAGCATATAGAAGCTAAGCACAGTGATGGCATCAGAGAGAAAGAAATCTGCTCAATTTGTCACAAGACATTCTCGTCCAAAAAGTACCTTAAAACTCACATGAAAGTTCATAATTTAGACAAAACTAATGCTAAGAAAGATCCTCAAAACGAGAAACCGTTCCTTTGTTCAGAATGTGGCCTAAGATTTGTCAGAAACGATTATCTAGTTATTCACATGCGACGTCATTTAGgcttaaaaccatacaaatgtcgTTTTTGTGATAAAGGATTTCCGCGGGCTACAGATTTGACGGTGCATGAGAGATACCATACCAATGAAAAAACtcatttatgtaatttatgtGGAAAAGGATTTCAGCGAGCATACAACCTGCTTGTCCATATGCGCGTGCATACCGgaGAAAAGCCTTATTCATGCAGTTACTGCTCAAAGTCATTTTCTCAAGGCAATGATCTCAAAGCTCATATAAGAAGACATACTGGCGAGAGATTTAAGTGCGACTTGTGCTCAGAAGGATTTATTCAAGGATATCATTTACGGAACCACAAGAAAACAGTGCATGGAATAGACATAAAATCGCACATTAGGAGAGTTGAAAAGTTTGTAAGTCCAGCAAACACGATGATCAAGGAGCAAGAAATGATAGAAATGCCAATTATCGAACAAGaagttaaaattgaaactgAATACAACGTAATTACCCAGAATTAA
Protein Sequence: METKLTVQLEEVSIEKVCRTCLNTAGDDTMISIYDICDEELANKQNFFELINETFGRIMPLTHNLPNRLCSECQVMIKKCCEFRKQCLNSTQILTEALESDINIFGVVDKCTQTEPQIIQMHFDDENFDTINMQEDGMFVNQSNQWSVIHPVISQESIIQLKVEHDDNNDSCIVDEHIEEHRSEDTKEFDYDNPLNEQDDEDERKQNHHCDICNKTFIRLTHLKRHQLSHNEGRSLQCTVCSKGFTRLDHLNHHMLSNHSESKPFHCDVPDCKKGFIKEEHLKKHIEAKHSDGIREKEICSICHKTFSSKKYLKTHMKVHNLDKTNAKKDPQNEKPFLCSECGLRFVRNDYLVIHMRRHLGLKPYKCRFCDKGFPRATDLTVHERYHTNEKTHLCNLCGKGFQRAYNLLVHMRVHTGEKPYSCSYCSKSFSQGNDLKAHIRRHTGERFKCDLCSEGFIQGYHLRNHKKTVHGIDIKSHIRRVEKFVSPANTMIKEQEMIEMPIIEQEVKIETEYNVITQN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00319922;
90% Identity: -
80% Identity: -