Basic Information

Insect: Chironomus tentans
Gene Symbol: -
Assembly: GCA_963573255.1
Location: OY754304.1:17787239-17788971[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.17 9.2 7.2 1.4 2 19 161 178 160 183 0.82

2 12 1e-05 0.00054 20.5 3.7 2 23 189 210 189 210 0.97

3 12 4.2e-07 2.2e-05 24.8 0.6 1 23 217 239 217 239 0.99

4 12 4.5e-06 0.00024 21.6 0.1 1 23 245 269 245 269 0.97

5 12 0.0003 0.016 15.9 0.9 1 21 274 294 274 295 0.96

6 12 0.003 0.16 12.7 2.4 1 23 322 346 322 347 0.95

7 12 0.0038 0.2 12.4 0.2 2 23 357 378 356 378 0.97

8 12 0.00021 0.011 16.3 1.3 1 23 382 405 382 405 0.97

9 12 0.00012 0.0061 17.1 1.9 1 23 413 436 413 436 0.95

10 12 1.8e-06 9.3e-05 22.9 0.4 1 23 442 464 442 464 0.98

11 12 0.00043 0.023 15.4 3.1 1 23 470 495 470 495 0.92

12 12 0.0041 0.21 12.3 2.8 1 23 502 524 502 524 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.17	9.2	7.2	1.4	2	19	161	178	160	183	0.82
2	12	1e-05	0.00054	20.5	3.7	2	23	189	210	189	210	0.97
3	12	4.2e-07	2.2e-05	24.8	0.6	1	23	217	239	217	239	0.99
4	12	4.5e-06	0.00024	21.6	0.1	1	23	245	269	245	269	0.97
5	12	0.0003	0.016	15.9	0.9	1	21	274	294	274	295	0.96
6	12	0.003	0.16	12.7	2.4	1	23	322	346	322	347	0.95
7	12	0.0038	0.2	12.4	0.2	2	23	357	378	356	378	0.97
8	12	0.00021	0.011	16.3	1.3	1	23	382	405	382	405	0.97
9	12	0.00012	0.0061	17.1	1.9	1	23	413	436	413	436	0.95
10	12	1.8e-06	9.3e-05	22.9	0.4	1	23	442	464	442	464	0.98
11	12	0.00043	0.023	15.4	3.1	1	23	470	495	470	495	0.92
12	12	0.0041	0.21	12.3	2.8	1	23	502	524	502	524	0.96

Sequence Information

Coding Sequence: ATGACTGATATAAAGGCATACTGCCAGTTTTGCttaaatatccaaaacaaGGAAGATCTGAAAATGCCAATCACCAGGAAAATCAAGCAggatttcttcaatttgacgagaaaaaagTTAAACACATCAATTTATTGTGAGTTTATATGCTGTCAACCATGTTTAGAGGAACTAGAATCTGTCATAGCATTCAGGTCAAAATTAATAGGAAACCAATTAACACTGGAAAGACTTCGTCGagacattttattaatcaagCCTGAGGCTCAAGAAATTAAGGAAGAATTAACAATTCCGGACATAAAAGAACATCCAGAAGAAATGGAGATAGAATATTTAGAAGAGCACATAATAGAGGAAGAGAACGAAAGTCAATTAATAGAGTCAGAGAGGCTTGATGAGACTGAAGAAATTTTCGATGAAGATCTGAGCAGCAGTAAGCGAAGGAAATATCCAAGAAAGCGACTAAAGGAACCAATTAAATGTCCAAAATGTGATCGACTGTTTTACTATAAAAGTTATTTCGCTTTTCACTTTAAGGATGTTCATCAGGAACAGTGTGAAGTCTGTCATCATTGTggaaaagtctttaaaaataGTCGACGACTAAATTCACACATATTAATCCATAACGTTGGAGAAAAACGATTTAAATGTGAGGAGTGTGggaaagaatttaattatagtGGAGATCTATTAAGGCACAAACGAATTCACGAGCAAATTAAACCTTATAGCTGTCCTTTTGAAGGTTGTGGAAAGTCATTTGTACAATCTTATGCATTAAAATTGCATCTAGATGTCCATAATAATGTTCGATTCAAATGTGATCGATGCGGAAGTGAATTTTCGGTTAAAACTACTCTAAAGAATCACATGCAAAAATGTATCAATGGAATCTCTCCTTATAGACAAtcaaaaaatcgtaaaaataataaagaacaTAATGGATCAAGAGAAAGATACAAGTGCTTTATGGAAAACTGTGATCGTGAATTTTCTAGCAGAAAGTATCTTGGCGTTCATTTAGAGAAACATCATCAAACAAAGCTTAACAATTTTGAAACGACATGTCTTGAATGTCAGATGGTCTTTGAAAATACTGGTGATTATGCTAAGCATGTAAAAATCCACAGCTGTTTATATGAATGCAACATGTGCAAGCTACGATTTAAGACTGATGAGAAGCTTAAGTCACATATTGAGAAACTGCATAAAGAAGGCGACGATCGACCATTTTCTTGTGACGATTGTGGAGCTAGATTTAAGAGAATGGAGCATTTGAGAGGCCACCAGCTGTACAAGCATTCTAATGTCAAGAAATTTGAGTGTTCAGAATGTCCATTAAAGTTCAGACAAAGAGGTGAATTTAATGTTCATATGAGAGTTCATCAGGACATCAAACCATTTAGCTGCTGGATAGAATCGTGTAATCATGTATGTAAAACTAGCTCGAATTTAAGGCAGCACATGAGGCTCGTCCATAACGGagaaattaacatttattgCTGTGAGATTTGTCGTGCAACATTCAAATACAATGTTGACCTTAGTCAACATAAAAAGGATCACTCAAATAGCACGATTTATGAGATTGTAGAAATTAATGCTGcaacttaa
Protein Sequence: MTDIKAYCQFCLNIQNKEDLKMPITRKIKQDFFNLTRKKLNTSIYCEFICCQPCLEELESVIAFRSKLIGNQLTLERLRRDILLIKPEAQEIKEELTIPDIKEHPEEMEIEYLEEHIIEEENESQLIESERLDETEEIFDEDLSSSKRRKYPRKRLKEPIKCPKCDRLFYYKSYFAFHFKDVHQEQCEVCHHCGKVFKNSRRLNSHILIHNVGEKRFKCEECGKEFNYSGDLLRHKRIHEQIKPYSCPFEGCGKSFVQSYALKLHLDVHNNVRFKCDRCGSEFSVKTTLKNHMQKCINGISPYRQSKNRKNNKEHNGSRERYKCFMENCDREFSSRKYLGVHLEKHHQTKLNNFETTCLECQMVFENTGDYAKHVKIHSCLYECNMCKLRFKTDEKLKSHIEKLHKEGDDRPFSCDDCGARFKRMEHLRGHQLYKHSNVKKFECSECPLKFRQRGEFNVHMRVHQDIKPFSCWIESCNHVCKTSSNLRQHMRLVHNGEINIYCCEICRATFKYNVDLSQHKKDHSNSTIYEIVEINAAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -