Basic Information

Insect: Chironomus tentans
Gene Symbol: -
Assembly: GCA_963573255.1
Location: OY754303.1:53340867-53342958[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 4.1e-05 0.0022 18.6 2.4 1 23 11 34 11 34 0.98

2 18 0.0098 0.52 11.1 0.2 7 23 45 61 39 61 0.86

3 18 0.0003 0.016 15.8 1.5 2 23 68 89 67 89 0.98

4 18 3.9e-05 0.0021 18.6 1.2 1 23 93 116 93 116 0.96

5 18 0.5 27 5.7 1.1 2 23 123 145 122 145 0.92

6 18 0.037 1.9 9.3 0.2 1 23 155 177 155 177 0.94

7 18 0.0001 0.0054 17.3 3.6 1 23 183 205 183 205 0.98

8 18 6.3e-06 0.00033 21.1 1.7 1 22 210 231 210 231 0.95

9 18 0.00072 0.038 14.6 1.0 1 23 346 368 346 368 0.98

10 18 0.00015 0.0081 16.8 4.8 1 23 374 397 374 397 0.96

11 18 0.14 7.2 7.5 0.2 2 23 413 433 412 433 0.92

12 18 5.6e-05 0.0029 18.1 0.9 2 23 439 461 438 461 0.95

13 18 0.00018 0.0097 16.5 1.2 1 23 467 489 467 489 0.97

14 18 0.069 3.7 8.4 1.1 2 23 497 518 496 518 0.94

15 18 0.06 3.1 8.6 5.1 5 23 530 549 527 549 0.90

16 18 3e-06 0.00016 22.1 1.4 1 23 558 580 558 580 0.94

17 18 0.0018 0.093 13.4 3.5 1 23 586 608 586 608 0.98

18 18 0.015 0.81 10.5 1.8 1 23 615 638 615 638 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	4.1e-05	0.0022	18.6	2.4	1	23	11	34	11	34	0.98
2	18	0.0098	0.52	11.1	0.2	7	23	45	61	39	61	0.86
3	18	0.0003	0.016	15.8	1.5	2	23	68	89	67	89	0.98
4	18	3.9e-05	0.0021	18.6	1.2	1	23	93	116	93	116	0.96
5	18	0.5	27	5.7	1.1	2	23	123	145	122	145	0.92
6	18	0.037	1.9	9.3	0.2	1	23	155	177	155	177	0.94
7	18	0.0001	0.0054	17.3	3.6	1	23	183	205	183	205	0.98
8	18	6.3e-06	0.00033	21.1	1.7	1	22	210	231	210	231	0.95
9	18	0.00072	0.038	14.6	1.0	1	23	346	368	346	368	0.98
10	18	0.00015	0.0081	16.8	4.8	1	23	374	397	374	397	0.96
11	18	0.14	7.2	7.5	0.2	2	23	413	433	412	433	0.92
12	18	5.6e-05	0.0029	18.1	0.9	2	23	439	461	438	461	0.95
13	18	0.00018	0.0097	16.5	1.2	1	23	467	489	467	489	0.97
14	18	0.069	3.7	8.4	1.1	2	23	497	518	496	518	0.94
15	18	0.06	3.1	8.6	5.1	5	23	530	549	527	549	0.90
16	18	3e-06	0.00016	22.1	1.4	1	23	558	580	558	580	0.94
17	18	0.0018	0.093	13.4	3.5	1	23	586	608	586	608	0.98
18	18	0.015	0.81	10.5	1.8	1	23	615	638	615	638	0.97

Sequence Information

Coding Sequence: atgcCGAAACCTGTTAGAAATAGATCTCAGTTTGAATGCACAATATGTAAGAAACAGCTTTCAAGTGAGGCACATTTCACAAAACACATGAACACTATCCATCAACCAAAACAGTTCATTTGTGATTACgatggaaaagttttcaatacaaaagaCTCACTACGACTTCACATGTTCAACCATCGAAAATATTACAAGATTAAATGTGAAGTCTGCAGTAAGGAATACAAAACGGATCAATCGATGAGGAAGCATCTAAGGACTCATTTTCAACAGCATCAGTGTGACTTGTGTGgacagatttttaaatatagaaGATTATTGCAGAATCATATTAAAGCTATACATGAGGAAGCACTGACGATACAGTGTAAATACTGTACAAGACTTTTTGCCAACACAACAACCCGCGATTCCCATCAACAACTTCTCCACAAAGACCAAAAAGagaatcagaaaattttcaaatgcacGGAATGTGCTGCTGGctttgaaatgaaagaagaattgCGAATTCACAGCTTTATTCATTACAATGGTACAATTCACACTTGCCTTGACtgcaatcaaattttcaagaagaaaaagcttttaaatattcacatgCAGAAGCACGAGATGACAAATTTTGTGTGTTCCGGATGCAGTCAAACTTTCAAGtacaaatcaaatttgaataagcATTTAAAGAAAGGACGATGTAAAGTGAGAAACGAGGAAGAAGAAGGTGACAAGTTGAATCAGGAAGTGGCAGAAATTGCAAGACAGCAGCTGATTAATATAACTAAGGATTATTCAAGGTCAGTCGTTGTTCCAACTAAAgatgaggaacaaaaaaagaaaattgcattGAAAGCTTCAAAGACTGTTGTAATTAAGGAGGTTGTTGATCCAGAAGACAATTTTGATAATCCAGATAATCTCGAATCACCAGAATCTCAAAATGAAGCTACAATTCAGACAAAAGACATCACAAAAAGAATCTAcatcaaaaagaaaacaacaaGGATTATCAAACCAGACACGACATCACAATATGAATGTGACATTTGTGGAGTAACATTCCAAATTAAGTGCAAACTTCTGTCTCACATTCGACTTCATATTTCATCAGTTAGAcataaatgcaaaatttgtgGAGAGACTTTTAGGAATATGAAGAACCTTCACACACATTCCATGAAAATCCATGGCAAAGGAGCATACGGGTCAGTCGTCTACAGTAAATTCTCGTCAGAATGTGAAATTTGTAAGAAATATTTCAGTGCTGAGCGGATAAAGGCACACATGGCACTTCATAATTCtccaaaaattgtttgtgaTCATTGTGGGAAATTTTACAGGACGAAGACAGCACTGGAATATCATTTGTCGATATCACataaggaagaaaagaaattcacATGCTCAGTTTGTGGCAAAAGCTTcaagaaaatgtcaattttaaagcagCATGAAGAGACTCacaatccaataaaaattttcataaaatgtgaaatgtgTCCGAAAATTCTGCAAACAAAGCATTTAAAACTGCACATGGACATCCAACATGGAAACAAGTACAACGAGAGAAATCATCATTGTCATTGTGGAAAGGCATTTAGGTACGAGAAGCAATTAGAGAAACATAAGGAACAAGTTCATGAAGCTAAAAATCGAGGAGCAATCTATCCATGTACAGACTGTGACAAAACATTTACAAGACGACAAGAACTGAGGAATCATTCCTTCATCCATTACAGTGGTCCAGTCTTTCAATGCACAACATGTCAactgaaatttaagaaaaagaagctACTGTACATCCATTCTAGGGTTCATAATGTAGCAACTACAAAATATCCATGCGGTCAGTGTCAAATGATATTTAAGACTTGTGGAGGAAGAAGGAAGCACCAACTGAAAGTTCATAAATGTGAGAAAGGTGTTGATGATGTCCTTGAATTGAGCGAAATGTACACGAtcatttaa
Protein Sequence: MPKPVRNRSQFECTICKKQLSSEAHFTKHMNTIHQPKQFICDYDGKVFNTKDSLRLHMFNHRKYYKIKCEVCSKEYKTDQSMRKHLRTHFQQHQCDLCGQIFKYRRLLQNHIKAIHEEALTIQCKYCTRLFANTTTRDSHQQLLHKDQKENQKIFKCTECAAGFEMKEELRIHSFIHYNGTIHTCLDCNQIFKKKKLLNIHMQKHEMTNFVCSGCSQTFKYKSNLNKHLKKGRCKVRNEEEEGDKLNQEVAEIARQQLINITKDYSRSVVVPTKDEEQKKKIALKASKTVVIKEVVDPEDNFDNPDNLESPESQNEATIQTKDITKRIYIKKKTTRIIKPDTTSQYECDICGVTFQIKCKLLSHIRLHISSVRHKCKICGETFRNMKNLHTHSMKIHGKGAYGSVVYSKFSSECEICKKYFSAERIKAHMALHNSPKIVCDHCGKFYRTKTALEYHLSISHKEEKKFTCSVCGKSFKKMSILKQHEETHNPIKIFIKCEMCPKILQTKHLKLHMDIQHGNKYNERNHHCHCGKAFRYEKQLEKHKEQVHEAKNRGAIYPCTDCDKTFTRRQELRNHSFIHYSGPVFQCTTCQLKFKKKKLLYIHSRVHNVATTKYPCGQCQMIFKTCGGRRKHQLKVHKCEKGVDDVLELSEMYTII

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -