Cten005575.1
Basic Information
- Insect
- Chironomus tentans
- Gene Symbol
- -
- Assembly
- GCA_963573255.1
- Location
- OY754303.1:2458326-2460729[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.02 1.1 10.1 0.3 2 23 12 32 11 32 0.97 2 22 0.0018 0.096 13.4 4.5 2 23 39 60 39 60 0.96 3 22 6.7e-06 0.00035 21.0 0.5 1 23 66 88 66 88 0.98 4 22 0.0013 0.07 13.8 3.5 2 23 96 117 95 117 0.97 5 22 0.021 1.1 10.1 0.3 3 23 125 143 123 143 0.87 6 22 4.2e-06 0.00022 21.7 0.8 1 23 149 172 149 172 0.98 7 22 9.8e-05 0.0052 17.4 0.2 2 23 179 200 178 200 0.96 8 22 1.5e-05 0.00079 19.9 1.8 3 23 286 307 284 307 0.96 9 22 0.069 3.7 8.4 6.2 2 23 317 339 316 339 0.95 10 22 0.0021 0.11 13.2 0.8 2 23 361 383 361 383 0.90 11 22 3.3e-05 0.0017 18.9 1.1 1 23 388 411 388 411 0.96 12 22 0.0017 0.088 13.5 0.5 1 23 417 442 417 442 0.95 13 22 0.0033 0.18 12.6 1.8 2 23 455 477 454 477 0.96 14 22 0.017 0.87 10.4 1.1 1 23 486 509 486 509 0.95 15 22 0.035 1.8 9.4 1.3 2 23 518 539 518 539 0.97 16 22 0.0014 0.075 13.7 0.5 1 23 543 565 543 565 0.96 17 22 1.1e-05 0.00057 20.4 1.4 1 23 575 597 575 597 0.98 18 22 0.0014 0.075 13.7 0.8 1 23 603 625 603 625 0.96 19 22 0.055 2.9 8.7 4.2 1 23 631 653 631 653 0.95 20 22 1.3e-05 0.0007 20.1 3.6 1 23 659 681 659 681 0.99 21 22 0.09 4.8 8.0 2.6 1 23 686 709 686 709 0.96 22 22 0.6 32 5.5 2.4 1 20 715 734 715 736 0.93
Sequence Information
- Coding Sequence
- ATGGGTGATAGTGAGACATTTAGTGAAGAAATTGTTTGtgaaaaatgtggaaattcCGTCAATAAAATGGATTATGAACGACATTTGAAGACTCACAAAGAAAAGAGAgTTGAGACATGCAATATCTGCTTAaagaaattcacaaatttatcGAATTTCAAGTACCATCTCAGCCATCATTCAGACGAAAGGAACTACATATGTGATGAATGTCCAAAAAGCTATAAAACAAAGATTGATCTGCTGCAGCACAAAAGAGTTCATGAGAAGATTAAGGAGCCAATGAGCTGTGAGGTTTGTCATCAAAAGTTCAGCATTCGATCGAAATATAATTCTCATCTAAGGACACACACAATTAAAGGTCCACAGAACTGTGAAATTTGTGGGAAAATGTTTGTAAATCTCCGATCGCATATCCAGCAAGTTCATCAGAAAGTTAGGAATCATAAATGCTCAATTTGTGATAAAGAATTTGGAAAAAGATCTGGATTAGTTAGGCACATTATGACTGTTCATGAAAAGATGAAATCATGGCCATGTGATGTTTGTGAAAAATCTTTTGGCGAAAAGACACAACTTTTAAGGCACAGAAAGattcattttaagaaaaacaataaatttgagaTGTTCAAAGACAATAACGCAGATGAATTAAAGTACGAAGAAGTTTTTGTCATTCAGCACGATGATTCTATAgacaatgatgatgaagcCTTTgtccaaaaagaagaaaataatgtcAATCCAAgcttaataattgaaaaactcGAATCAACAGAACTTGACACATATTCAATAGAAGTTCTGGACGAGTTTAGggattcattaattatagaaGTTACTGAGGATATAATATGTCATATCTGCTCAGCTACTTTCAAGCAAAAACGATACCTTCAATCACATTTGAGGACAGTCCACAAAGGAgacaatgaaaaatcaaaagttgaatgcaaattttgtcatgaaaaattcacacatCGAACTCAAAGACTCCGTCATGTCCGACAGAACCATCCAGAAGTTTTTGAGGAGGAAGCAACTGATCAGACAAGTCATACTGAAGAAATAAGCAGTAGAACGTGCAATTTATGCAATAAAGTCTTCAAAcagattaaatatttagaattacaCAAATCAGACGTCCATAAAACAGAACTTTTTGAATGTGATTTATGCCAACGAACATTCACGTTTAAAAGATCTATGGAAAGGCACATTAGAGCTATTCACGAGGACAGAAGAGATTATCAATGTCAAGAATCATCGTGTCTTAAGGCTTTTAGGTCACAATATGAGCTTAATGAgcatgttaaaaatattcacacaaaaattaaaaggaaCGAGCCTTTAGAAGATGTAACTTGTGATGTCTGTGAGAAAATTTGTTCCTCAAAAAAGAGCTTGTACTCACATAAAAAGATAGTCCATGAAGGTGTTAAATGGAATGAGAATTATGACTGTAAAATATGTTTGGAAAAATTCGATACaaaatacatgaaaatcaAGCATTTAAATCAAGTCCATAAGAATGgggaaataaaattcagaacaTGTCATTTGTGTTCCTTGGAATTTCAATTCTATGATGATTTTAAAGCCCACATAGAATCTCATAAAGGCTGTTTCATTTGTTTGATCTGCGgacataattttgatgatgagtctttgttattcattcataaagaGTCGCATAAAAAGATTGAGGAGGAATTTAGGCAATTTATTTGCGATATATGTAGTCATGCTCTGAGTACAAAATCACAGCTACAAATACATATGAGGAAGCACACATCCGAAGATCATTATGTTTGTGATGAATGTGGCAAGTCGTACAAGTTCTTAGCGCCTTTTCTGCATCACAAAATTgtccatcaaaataaatttgattacaGCTGTTCGTACTGCAATAAAGCCTTTCGTAAAATGTGCGATAAAGTCTTGCATGAAAAAACACATAGTGGAGTTCGTCCGTACAGATGTCATCTTTGTGAGAAAACGTTTGCTTTGAAGCCAAACTACACGAATCACATGAAAACTCATCAGCCGAAATATTTTGAGTGCAAAATATGCCATATCCATCGAAATTCTTCAGTTAAACTCCGTGAGCATGAAATGATGGAGCATCCTGaagaatttccatttaaatgtccaagttgtaggaaattattcaaaatttctcatacATTTGAGGATCATAAAGATAAATGCTTGGaatataatcaataa
- Protein Sequence
- MGDSETFSEEIVCEKCGNSVNKMDYERHLKTHKEKRVETCNICLKKFTNLSNFKYHLSHHSDERNYICDECPKSYKTKIDLLQHKRVHEKIKEPMSCEVCHQKFSIRSKYNSHLRTHTIKGPQNCEICGKMFVNLRSHIQQVHQKVRNHKCSICDKEFGKRSGLVRHIMTVHEKMKSWPCDVCEKSFGEKTQLLRHRKIHFKKNNKFEMFKDNNADELKYEEVFVIQHDDSIDNDDEAFVQKEENNVNPSLIIEKLESTELDTYSIEVLDEFRDSLIIEVTEDIICHICSATFKQKRYLQSHLRTVHKGDNEKSKVECKFCHEKFTHRTQRLRHVRQNHPEVFEEEATDQTSHTEEISSRTCNLCNKVFKQIKYLELHKSDVHKTELFECDLCQRTFTFKRSMERHIRAIHEDRRDYQCQESSCLKAFRSQYELNEHVKNIHTKIKRNEPLEDVTCDVCEKICSSKKSLYSHKKIVHEGVKWNENYDCKICLEKFDTKYMKIKHLNQVHKNGEIKFRTCHLCSLEFQFYDDFKAHIESHKGCFICLICGHNFDDESLLFIHKESHKKIEEEFRQFICDICSHALSTKSQLQIHMRKHTSEDHYVCDECGKSYKFLAPFLHHKIVHQNKFDYSCSYCNKAFRKMCDKVLHEKTHSGVRPYRCHLCEKTFALKPNYTNHMKTHQPKYFECKICHIHRNSSVKLREHEMMEHPEEFPFKCPSCRKLFKISHTFEDHKDKCLEYNQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -