Cten000273.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chironomus tentans
Gene Symbol
-
Assembly
GCA_963573255.1
Location
OY754302.1:2794718-2800580[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 43 2.1e-05 0.0011 19.5 2.8 2 23 34 55 33 55 0.97
2 43 1.2e-05 0.00062 20.3 0.5 1 23 61 83 61 83 0.96
3 43 0.00016 0.0086 16.7 1.3 1 23 90 112 90 112 0.99
4 43 0.00024 0.013 16.2 0.9 1 23 154 177 154 177 0.97
5 43 5.2e-06 0.00027 21.4 0.4 1 23 183 205 183 205 0.98
6 43 0.029 1.5 9.6 4.3 1 23 233 256 233 256 0.97
7 43 0.00032 0.017 15.8 0.8 1 23 262 284 262 284 0.97
8 43 0.0019 0.099 13.3 4.3 1 23 395 418 395 418 0.97
9 43 0.01 0.53 11.1 1.8 1 23 422 445 422 445 0.96
10 43 0.0014 0.075 13.7 3.4 1 23 450 473 450 473 0.97
11 43 0.00085 0.045 14.4 0.9 1 23 479 502 479 502 0.95
12 43 0.011 0.61 10.9 6.4 1 21 512 532 512 535 0.94
13 43 0.15 8 7.3 0.3 3 23 579 599 578 599 0.96
14 43 0.0012 0.062 14.0 0.8 1 23 603 625 603 625 0.96
15 43 0.023 1.2 9.9 1.9 1 23 635 657 635 657 0.98
16 43 0.0014 0.075 13.7 3.0 1 23 664 686 664 686 0.96
17 43 8.5e-08 4.5e-06 27.0 0.6 1 23 691 713 691 713 0.98
18 43 0.00093 0.049 14.3 2.3 1 23 719 741 719 741 0.98
19 43 0.0016 0.085 13.5 0.4 1 20 747 766 747 768 0.94
20 43 0.00044 0.023 15.3 3.2 1 23 799 821 799 821 0.94
21 43 5.8e-05 0.003 18.1 0.1 1 23 827 849 827 849 0.96
22 43 3.7e-05 0.002 18.7 1.3 1 23 856 878 856 878 0.99
23 43 0.21 11 6.9 0.3 2 14 887 899 886 906 0.85
24 43 0.72 38 5.2 4.4 1 23 912 939 912 939 0.91
25 43 3.8e-06 0.0002 21.8 0.8 1 23 945 967 945 967 0.99
26 43 0.0027 0.14 12.8 1.7 1 23 999 1022 999 1022 0.95
27 43 0.54 29 5.6 3.1 1 23 1028 1050 1028 1050 0.97
28 43 0.012 0.64 10.8 1.7 2 23 1117 1139 1116 1139 0.96
29 43 0.87 46 4.9 0.9 5 23 1151 1170 1148 1170 0.92
30 43 0.026 1.4 9.8 3.6 1 23 1176 1199 1176 1199 0.94
31 43 4.2e-05 0.0022 18.5 3.9 1 23 1204 1227 1204 1227 0.98
32 43 0.18 9.6 7.1 3.2 1 23 1233 1255 1233 1256 0.92
33 43 0.017 0.92 10.3 0.4 2 23 1265 1287 1265 1287 0.95
34 43 0.00015 0.008 16.8 0.8 1 23 1292 1315 1292 1315 0.96
35 43 0.00025 0.013 16.1 4.3 1 23 1321 1344 1321 1344 0.96
36 43 0.0002 0.011 16.4 1.1 1 23 1354 1377 1354 1377 0.95
37 43 1.4 75 4.3 5.1 1 23 1388 1411 1388 1411 0.90
38 43 0.33 18 6.3 0.3 3 23 1421 1441 1420 1441 0.96
39 43 0.001 0.053 14.2 1.8 1 23 1477 1499 1477 1499 0.98
40 43 0.089 4.7 8.1 0.4 1 23 1506 1528 1506 1528 0.92
41 43 1.9e-05 0.001 19.6 1.7 1 23 1534 1556 1534 1556 0.98
42 43 1.7e-05 0.0009 19.8 2.0 1 23 1562 1584 1562 1584 0.99
43 43 0.0096 0.51 11.1 1.0 1 23 1591 1614 1591 1614 0.94

Sequence Information

Coding Sequence
ATGAGTGGACAAGTGGTTTGTGAAGTTTGTGGATTATTGGTGGAAGTAAACAAATATGAGAGACATAAAAGATATGGACATAAGGAGAACAAGGATAACAAATGTAATCTGTGCGATAAAACCTTCACGAGTCTCTATAATCTTCAGTATCATATGGCTCATCACATTAATGCTAGATCATTTTTATGTACCGAATGCCCAAAAACTTATAATACAGTATCAGATTTAGCTCAACATCAGCGAACACATGATAAAGGCAGAGATCCATTCAAGTGTGAAGAATGTGGAATGTTCTTTGAAGCTAGGGGTAAATTCAACACCCACATGAAAACTCATGAAGCTAAAGTGAAGCCACCTCCTGTACCACGAAAAGTGGAACCAAAAGAATGTCCTATTTGTGAGAAGAGCTTCTTGTGCCTATCAAAGCACAATCTAATTGTTCATATGAATCAGAGGAACTACGATTGTAAATTCTGTGACAAGAAGTTTGGCAAGAAATCAGGCTTGGATAGACATGTGCTGACGGTacataagaaagaaaagaattttaaatgtgagGAATGTGGAAAAGCTTTTGGGGAGAAAGCTCAGCTGAAAAAGCATGAACGCCTTCATTTATTCACATACTGTGCAAAGTGTAAAGACcattttgaaaacataaagcagcataatgaagaaaaacatAGCAAGCTCAAGCATTCTTGTGACAGCtgctttaaagtttttgaaagaTTCCGAGACCTAGAAAGCCATAAGAAAACTAAGCACTCAACAATACGCTCATTTTTCTGTGATTATTGTGAGAAGGGATTTgctgaaaaattccaaatagaACGGCACATGAAGGTTCACAAGAGACGATTTATGCGCGATGCAAAAgttaaaaaggaagaagaattcAGCTCTAATGAAATGGATGATATATTTAGCTCAGAACTGGATATAAAGGAAGAGGACAAAAGTGATGATATACAGGAACGAGCTTATAATAAGTGTATGATTCCTGAGgtaaaaattaaggaagaagaagaggaagacTTAATTAAGTATGATTTTGATCCCATAAATTCTATATTTGCGGATGAATTGGATTTCAAGCAGGAAACAGATAATGATTGTACATTAAATGACCAAAGTGATGATTCAGCTGTAACTGACAGTCAAaagaatcacaaaaatgctcaCCGCTgtggaaaatgtaaaaaagtgtttgacaataaaaatgttcttaaaaAGCATTCGAGAAAAGAACACGGCAATAAGTTTATCTGTGATTTATGCGGTAGCCAATTTTCACACAAGTTTACTGCTCGAAAACATATGGAATCAATTCACAAGAAGATCAAGTATGAATGTGAAATCTGTCACAAGACATTCACTTTTAAGAACTCAAAGTATACTCACATCAAAGTCGTGCATCAAAAGAAACGATTACATGAATGTCAGTTCTGTGAGAAGAAGTTTGGAGTTAAATATGCTCTAACAAAGCACATAGAAATTGTTCATTGGGAGAATCCAAGTGATCGAAAGAGACATAAATGTGATTTATGTGGAAAGAACTTTTCATCACACAGTGGCCTTTTTACCCATAAGAAATGTGTTCATGAGAAAGTAAAGCGTCAACAAATAGTTGAACATCCATGTAAAATATGTTGTGAACCATTCAAAACAAGTCATCACCATTTAATGCATTCAATTCAAGTTCATTTGAATGGAAAGAAGCTTAAGAGAATTTGTGGATATTGTAAACAAGAATTTGAACTTTACGAGgattttaaaactcatttaGACTCGCATGTTGGACTGTTCATATGCATGATTTGTGATAAATTCTATTCTGATGAACAATCACTTAAATCTCACAAAGAATCACATAAAGAAGTTGATTCTGAATTCAGGAACTATATTTGTGATCACTGTGGTCAACGGTTATTGACAAAACTTCAGTTGAAGatCCATTTGAGGAAGCATACCAAGAGCTTTAAACTACATTACTGTGATTATTGTGGTAAAGGATTCAAGTTTGTGTCGTCACTTTATACCCATAGAATATATCATGAAGATGGAAGATTCGTTTGTTCATATTGTGGGAAGAAATTTGCTAGAAACTCTGAGCTTGTTCAGCACATTCGCAGCCACACTAATGAGAAACCTTTCAAATGTGAAATTTGCGACCGTGgatttacatcaaaaaatttactgaaattCCACAAACAAACGCATCCAGAAACTAATGGATTTAAATGCAGAGAATGTCAACAAGTGTTTGTTACCAAAAAACAGCTAGCTGATCACGAAAATCAAGTTGTTTGTGATGTTTGTGGAATATTAGTAGATTCCAACAAATATgagagacataaaaaatttggacatAAAGAGAAGatcaaaaaggattttttgtgCAGCATGTGTCAGAAAAACTTCACGAGTCTCTATAATCTACAGTATCATATGGCTCATCACATTAATGCTAgatcatttttatgtaatgAATGCCCAAGAGCTTACAATACAGCTGCAGATTTAGCTCAACATCAACGAATGCATGACAAAGGAAGAGATCCATTCAAGTGTGAAGAATGTGGAATGGCTTTTCaaataagaagtaaatttaatacacATATGCGAACCCACAAAACGGAATCTAAGGAACCAAAAGAATGCAACATCTGTAAAAAAAGCTTCATATCTTTGTCAAGTCACAACCGAATTGTACACATGAATCTCAGAAATTATGACTGTAAGCTCTGTGATaaaaagtttggtaaaaagtttggtaaaaagtCAGGCTTGGATAGACATATCTTGACAGTCCATGAACagcaaagaaattttaaatgcgaGCAATGTGGAAAAGCTTTTGGAGAGAAAGCTCAGTTAAAGAAGCATAAACGTGTTCATTCTTTAGTTAAGGAAGTGACATACTGTACAAAATGTAAGGagaattttccaaatattAAGCAGCACTATGAAGAAATGCACAGCAATTTGAAATATCTTTGTCAAAGCTGCTTCAAacgattcaaaaatattcgagATCTTGAAATTCACATTAAGACAAAACACTCAACATTCCGTTCATATTTCTGTGATTATTGCTGTAAAGGATTTgctgaaaagtttcaaatagAACGACATTTAAAGCTTCATGTTAAGATTATTAGTTCCAGTAAGAAACTCAAAGAAGAGTTTGAATATTGTGAAATGGAAAGAGTCTTTCTGGATCATGACATGAACATTAAAGAAGAAGATTATGATGTAGAAAGGAACGATATCAACCAGGAAAGTGATTTAAAAGTATTCGACAACAAAGATGTCTTGCAGAATCAATGTCAAGTAGATTCAATAACTTGTGACAGATGCAATGCAAAATTTCCCACCAAACATGAAGCACAACAGCACATGCAATCTAGACATTTATCAATAGATGCTGTTGAAATAGCTTGTATAGGATGTGGACAtaaatataattcaaaatcTGACATGCAAGgacatttcaataaaattcatgacaCTGTGAATGGCTTCCATTGTACAATCTGCAACAAAATGTTTGGAAAAGTCAAGCTGCTTAAAGTTCATCACCAAGCTAATCACACGAACATCAAGTATGAATGTAAGGActgtaaaagaaaattcagtTATAAATCAGCATTAGATAGACATTACAAAAGAAAGCATTTAAAGGAAAGGAATCACGTTTGTCAAGAATGTCAACGACAGTTTGGTACGAAATTTGAATTGGACCAACACTTTGAAGGACATCATCGAAATATGACAAAAGAAAATCGGACCtgcaatttttgtatgaaaacttttatcaATGAAAGGAATTTGGATATCCACATGCAAGCCATCCACAATAATAGCAAGCACGAATGTGAAATTTGTGGAAAAGCATTCAGCTTTAAATCAGCAAAGGATAGACATCTAAAAGTTGTTCATCTACATCAAAAATGTCACGAATGTGAAGATTGTAAGAAGACATTTGGAACTAGATATGATCTTAAGAATCATTTTAATCGTTTCCATAATGAGAATCCAGTTGAACGAAAAAGATACAGCTGCTACCGATGCAATAAGGACTTTGTCACATCAAGTGCCCTTTCAAGGCACAGAAAAGGTGTTCATGAGAATATTAAGCAGAAGGCACCAAAAGATTACAGATGTAAAATTTGTCATGAACATCTTATTAACAAGTATCAGAAGGAGAAGCACTTTACCCAAGTGCATttaaatggacataaattgAAAAGGTCATGTGGATATTGTGAGCTAGAATTCCAATTTTATGAGGACTTTAAAAATCACGTCGAGTCAcacattggaatttttatatgcaTTACATGTGGTGCTACTTTTATGGACctagaaatattaaatcagCATGTTGAAAGccataagaaaattgaattgaaattgaggaGATTTATTTGTGATTTATGTGGACATCGACTTTTTAATAAGATTCAACTGAATGTTCATATGAGAAAGCATGTCCagcataaaaacttttacgTCTGTGAAATCTGTGGACAGAGTTACAAGTTTATTGCACCATTTTTATACCATAAGAAGTTGCATCTAGGTCAAAAGGAATTCAAATGCAGCTATTGTAATAAAGGATTTGTTCAAAAACAGGATTTGTTGATCCACACACGTCAGCATACAAACGAAAAGCCATTCAAATGTCCAGTTTGTAGGAAGAGATTCTCCCAGAAGCAAGTTCtaacttctcatctacaaacTCACACATCAACTAGAATATCTTATGACTGCAGTGCCtgtaatttgacatttttcgaCAAATCAAAGCTTAAAACTCACGAGGAGAAGGTTCATCCAGAGAAAAGACCATACATCTGCTTCTGTAGCATGACATTCAAGCACGAACATAATTTCCGAtcacataaaattcataagcATCAGCTGGACAgtgatattttgaaaatagaacatgattttaataaatcatag
Protein Sequence
MSGQVVCEVCGLLVEVNKYERHKRYGHKENKDNKCNLCDKTFTSLYNLQYHMAHHINARSFLCTECPKTYNTVSDLAQHQRTHDKGRDPFKCEECGMFFEARGKFNTHMKTHEAKVKPPPVPRKVEPKECPICEKSFLCLSKHNLIVHMNQRNYDCKFCDKKFGKKSGLDRHVLTVHKKEKNFKCEECGKAFGEKAQLKKHERLHLFTYCAKCKDHFENIKQHNEEKHSKLKHSCDSCFKVFERFRDLESHKKTKHSTIRSFFCDYCEKGFAEKFQIERHMKVHKRRFMRDAKVKKEEEFSSNEMDDIFSSELDIKEEDKSDDIQERAYNKCMIPEVKIKEEEEEDLIKYDFDPINSIFADELDFKQETDNDCTLNDQSDDSAVTDSQKNHKNAHRCGKCKKVFDNKNVLKKHSRKEHGNKFICDLCGSQFSHKFTARKHMESIHKKIKYECEICHKTFTFKNSKYTHIKVVHQKKRLHECQFCEKKFGVKYALTKHIEIVHWENPSDRKRHKCDLCGKNFSSHSGLFTHKKCVHEKVKRQQIVEHPCKICCEPFKTSHHHLMHSIQVHLNGKKLKRICGYCKQEFELYEDFKTHLDSHVGLFICMICDKFYSDEQSLKSHKESHKEVDSEFRNYICDHCGQRLLTKLQLKIHLRKHTKSFKLHYCDYCGKGFKFVSSLYTHRIYHEDGRFVCSYCGKKFARNSELVQHIRSHTNEKPFKCEICDRGFTSKNLLKFHKQTHPETNGFKCRECQQVFVTKKQLADHENQVVCDVCGILVDSNKYERHKKFGHKEKIKKDFLCSMCQKNFTSLYNLQYHMAHHINARSFLCNECPRAYNTAADLAQHQRMHDKGRDPFKCEECGMAFQIRSKFNTHMRTHKTESKEPKECNICKKSFISLSSHNRIVHMNLRNYDCKLCDKKFGKKFGKKSGLDRHILTVHEQQRNFKCEQCGKAFGEKAQLKKHKRVHSLVKEVTYCTKCKENFPNIKQHYEEMHSNLKYLCQSCFKRFKNIRDLEIHIKTKHSTFRSYFCDYCCKGFAEKFQIERHLKLHVKIISSSKKLKEEFEYCEMERVFLDHDMNIKEEDYDVERNDINQESDLKVFDNKDVLQNQCQVDSITCDRCNAKFPTKHEAQQHMQSRHLSIDAVEIACIGCGHKYNSKSDMQGHFNKIHDTVNGFHCTICNKMFGKVKLLKVHHQANHTNIKYECKDCKRKFSYKSALDRHYKRKHLKERNHVCQECQRQFGTKFELDQHFEGHHRNMTKENRTCNFCMKTFINERNLDIHMQAIHNNSKHECEICGKAFSFKSAKDRHLKVVHLHQKCHECEDCKKTFGTRYDLKNHFNRFHNENPVERKRYSCYRCNKDFVTSSALSRHRKGVHENIKQKAPKDYRCKICHEHLINKYQKEKHFTQVHLNGHKLKRSCGYCELEFQFYEDFKNHVESHIGIFICITCGATFMDLEILNQHVESHKKIELKLRRFICDLCGHRLFNKIQLNVHMRKHVQHKNFYVCEICGQSYKFIAPFLYHKKLHLGQKEFKCSYCNKGFVQKQDLLIHTRQHTNEKPFKCPVCRKRFSQKQVLTSHLQTHTSTRISYDCSACNLTFFDKSKLKTHEEKVHPEKRPYICFCSMTFKHEHNFRSHKIHKHQLDSDILKIEHDFNKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-