Basic Information

Gene Symbol
TRERF1
Assembly
GCA_963573255.1
Location
OY754304.1:25760471-25770439[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 6.6e-10 7.2e-07 29.4 0.1 2 45 1144 1187 1143 1188 0.94

Sequence Information

Coding Sequence
ATGTTCAAGCATCGCTTCGTGAATTGTTTAGTAACACAGGACGTGTGCAGTAAAGTTTTCGGAAATGCATCAGCATTAGCAAAGCATAAATTGACACATAGTGATGAGAGGAAATATGTATGTGGCATGTGTTCGAAAGCATTCAAGCGTCAGGATCATCTAAATGGACACATGTTGACACATCGGAATAAGAAACCGTATGAGTGTAAAGCAGAAGGATGTGGTAAATCTTACTGTGATGCGCGCTCGTTGAGACGACATACAGAGAATCATCATAGTTCATTGGTTCTTGCGACAACAACCACGACAACGTCATCTTCACAAAATCAATCAAACAGCATGTCGTCCAATAATGCAAGCAGCGGTACATCAACAATTACCAATCCCAGTTTATCACCCGCAACAGCAAGCGGTGATGCTAGTTCGCCGCATGGTGCTACCTGTATTCAATATCAGATGAATGCTGATGGAAATACAATTACTGCAATCAATTCAAAATCGCCATCTCCATCATCGCCTGCTGGGACGAGTAATGAAGGATTAACACGTCAACAGTTGGATTTGATTAGTCAAATTATGCAACAGACGAAGCATGCGAATGGACACAAATCGACAGCTCAACGACCGAGAACATGGAATATGCAGCTACAGCAAAATCAAGTGAAGACATCAACAACTATTGAAACTGCTGTGAAATCCAATGCCAATCAACATCAAGTATCgacgtcatcatcatcaacaacaacaaatagTCAGCAAACCACACCAGCACAAAAGAATACCGGTGCTAATGGGGGTGATCAGAAGCCTGTGGAGTGTAATTTGTGTCATaggaagtttaaaaatataccaGCACTAAACGGACATATGAGACTTCATGGTGGCTATTTCAAAAAAGATACGGATACAAAGAAATCAGACAAAAAGGAATCATCAGGACCGCCGCTGCAGACAGCCTCGGTTGGTGTTCGAGCGTTaattgaagagaaaataatcaacaagAGAAGCAAAGACTTGAAGGGAGCATTTGTTGTACCAGCAGCACCCTTGTCCACAACACGACGTCTTGCAGAAGCGGAAGCCTTTTTGAATGCTAAAAATGTGAGCACATTATCAAATACTAATAACAATACAATCACAATTGTAGCATCTGGTCTCACATCAAATACACTTAATGGACTTGCGAAGCAAGCAATTGTGCAACAAGTCGCTCAACAGACGACAACAAATGTTGTTCAGAAGGCGACACAAATATCGACATTATCGGGTGAAAAAGATGCAACATTAATTGAGCTATTGAAACGTGGAACGACAAAAGTTGCTGTAAAGAGAGCATCTACTGACTCGAATGCCAGCAATTCCATTCAAGCAACCAGAGTTGTGGTACCTGCAACAATTTCCACAACAGAAACTGTATCAGATTCTTCGCCATCATCGTTAGTTTTAACATCGAATGGCTCATCGAGTCCACTATCATTAACAATATCTCAAGCACCCAATACAAGTGGCTCATCCGGAGACATTTATGCACTCACATATTCAGCAAATAGTTCCCCATCCTTTCTCAGTGACAGTGATGTTTATAGCGTTAATGACACTGCAATGCTCTTGCAAGCTGTCGACTCAATACATTTATTGCAAGATAACTCCACATCAGATCATCTTGATGACATTGCATCCCTAAGTGATTATACATCATTATCAGATAGTGTATCGCTCAATCAAAGCTTCACGCCATCACGTCAATTGCAAGCTGTCCTAGATTCTCCTCTACCCGATTCACTTGTTGAGTTTGGTACTTTGAATTCCAAGGATTATGTTCTGTATGGATGCAGTAGTAGCAATGAATCTCCAACATCATCTTCACCATTACCATCACCTTTAGCATATCCAACTCCGCCTGCAAGTCATGAAGCAATTGCACAGGCTTCACCATTCCTTGACGACTCACATCATTTCTCTGATGTCAGTACATTTTTCCATGACGACAAAAAgacaaatatgaaaaataataataatagtgtAAATGATTTTGGACTGCTGGATGATAGCAATGAATTGTTCCACAATATGAAAGATACAAAAGACAATAGTAATCTAACTGAAAGTGAGCGCATCTTACAACTTAAAAACGAATTATTCAATGATAGTAAGGCAGTTTTGGAGGAATTTCGGAATTGTAACAGTAACAGTTGTAGCGGAAGTAACAGTAATAAAAGCATTTTAGATAATAGTTTTCTAAATAACGATTCAAAAACATTCATCGGTGATAACAGTGCCAAATTACaagattttaatcaaaatttagatTTCTTAGATGAAGCACAAGCATTTAATATTGTCGATGATGATCGAGTGAATGCATCGTCACCATTATCTGCTGCATTTTTCTCGTCTATGTCAACGGCTGAGGAGGTCAAAGAGGCATTAGAGGAAGTCCTGCCTAATGAAGATGATGGTGCTGGATCAACTTTAGACTTGTATTTCCTATCAGCTGGTCTATCGCTTCaatcacaaatgatgtcaaaTTCAGATGATCCACTCCTTTCTTCTGTTCCACGTGATTTTGGACATCATCGTAGTCAGCCGCATCTGATATCATCGTCGACTTCTTCGTCTCTACAAAATTCACAATCACACGAAACACCACATTTTGATATTGATCCATTCTCACCACCAGAAactaaaagaattaaaattgaaagtcaTCATAATAGTCCAATAATTGAATCCAGTGATAATAGTGATAAGAATCTTTTAAGTGTACAAACGGAACAAATTCTAACAAAAGATAATATTGGTTCAGTCTTCCTGAGTCCAAATAGCatatcatcttcatcatccggttcatcaccaaaaattttacaaagtgCTTTGCTCtctaataaaagaaaatttaataattttaatgataataatcTAAGTTGTAATCTAAATGAGCAGTACGAAGTGGTTGTTAAGAAACACGAGCAATTCAAATCAAAGATGAAAAGAATATCTCAATTGCATTATACACCGTCACCAATTTTAAATCCAGAACGATATGGCATTGGACTATATGCATCAGTCCCAATCGATCgattaaataatgattttgatgatgagGTTGATATGATTGATTTCTTCGAAAAGCCTAGAGTCAATATCGGCACGGATTATCAAGCAACATTGCCATCggaaataatttataacaatAATAGTTTTAATAATAGCATTAAGTCTGAGGATAAGAAAACATATGAGACGTTACTATGGAAACCAAATGTCCTCGAAAATGATCGTCAATTAGACCGTTACATCGATTTAACAAAATCGTCAGCTGTACCCACCCATTCAATTGAGTCTGCCTTAAAGATACTTATGGAATCACAAGGTGAAGTGCATGTGGCTGTAATGAAATTGCTCCAAAGTAGTGACAAAAGTCTAGAGAAACGTTGGTCGCAAACCGAAATGGAGCAATTCCTAAGGGGATTAGAAAAGTATGGAAAAGATTTCACAAGCATTGCACGAGGCATCCTTAACAAGACAACTGGTGATTGTGTTCAATTATATTACTTCTGGAAGAAATTGTGCAATGAATATAAATCGACGCATCTTCCACAGCAACAGCACCAGCAAATACAACAACAATATCTACAGCAGTGtcatcagcatcatcatcaacaacagtCATTTCGTGATTGCAATATGATAGGAAATGATAATAAACATAACAATAACAGCGacgatttttttgattatgttgaaaatattaacGATAACAATAATTTGAGTAATTCAACGATCCAAAACGGAAATGGAATTGgtcataataacaataataataattctacTGTCGCTGGCCACAATAACGAATTGCGACCGCATGTGTGCGAAGTACCGGATTGTTCAGCcAGCTTTTCATCTCGCGTTGCATTGCATGGACACACACGAATTCACTGCATTGGACGAAGCATGAACCAGTTGAATAATGgtaatttattaaacaataGTAATCAAGCGGGAACAAGCTTAAAGGATGAATTTTCCTTCCCCTGCAAGGTGTGCGGCAAAGTATTTAATAAAGTCAAAAGTCGAAGCGCTCACATGAAATCACATCGGCctcaagaaaatgaaaatcagcAATGTTAA
Protein Sequence
MFKHRFVNCLVTQDVCSKVFGNASALAKHKLTHSDERKYVCGMCSKAFKRQDHLNGHMLTHRNKKPYECKAEGCGKSYCDARSLRRHTENHHSSLVLATTTTTTSSSQNQSNSMSSNNASSGTSTITNPSLSPATASGDASSPHGATCIQYQMNADGNTITAINSKSPSPSSPAGTSNEGLTRQQLDLISQIMQQTKHANGHKSTAQRPRTWNMQLQQNQVKTSTTIETAVKSNANQHQVSTSSSSTTTNSQQTTPAQKNTGANGGDQKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDTDTKKSDKKESSGPPLQTASVGVRALIEEKIINKRSKDLKGAFVVPAAPLSTTRRLAEAEAFLNAKNVSTLSNTNNNTITIVASGLTSNTLNGLAKQAIVQQVAQQTTTNVVQKATQISTLSGEKDATLIELLKRGTTKVAVKRASTDSNASNSIQATRVVVPATISTTETVSDSSPSSLVLTSNGSSSPLSLTISQAPNTSGSSGDIYALTYSANSSPSFLSDSDVYSVNDTAMLLQAVDSIHLLQDNSTSDHLDDIASLSDYTSLSDSVSLNQSFTPSRQLQAVLDSPLPDSLVEFGTLNSKDYVLYGCSSSNESPTSSSPLPSPLAYPTPPASHEAIAQASPFLDDSHHFSDVSTFFHDDKKTNMKNNNNSVNDFGLLDDSNELFHNMKDTKDNSNLTESERILQLKNELFNDSKAVLEEFRNCNSNSCSGSNSNKSILDNSFLNNDSKTFIGDNSAKLQDFNQNLDFLDEAQAFNIVDDDRVNASSPLSAAFFSSMSTAEEVKEALEEVLPNEDDGAGSTLDLYFLSAGLSLQSQMMSNSDDPLLSSVPRDFGHHRSQPHLISSSTSSSLQNSQSHETPHFDIDPFSPPETKRIKIESHHNSPIIESSDNSDKNLLSVQTEQILTKDNIGSVFLSPNSISSSSSGSSPKILQSALLSNKRKFNNFNDNNLSCNLNEQYEVVVKKHEQFKSKMKRISQLHYTPSPILNPERYGIGLYASVPIDRLNNDFDDEVDMIDFFEKPRVNIGTDYQATLPSEIIYNNNSFNNSIKSEDKKTYETLLWKPNVLENDRQLDRYIDLTKSSAVPTHSIESALKILMESQGEVHVAVMKLLQSSDKSLEKRWSQTEMEQFLRGLEKYGKDFTSIARGILNKTTGDCVQLYYFWKKLCNEYKSTHLPQQQHQQIQQQYLQQCHQHHHQQQSFRDCNMIGNDNKHNNNSDDFFDYVENINDNNNLSNSTIQNGNGIGHNNNNNNSTVAGHNNELRPHVCEVPDCSASFSSRVALHGHTRIHCIGRSMNQLNNGNLLNNSNQAGTSLKDEFSFPCKVCGKVFNKVKSRSAHMKSHRPQENENQQC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00321042;
80% Identity
iTF_00321042;