Cten016172.1
Basic Information
- Insect
- Chironomus tentans
- Gene Symbol
- -
- Assembly
- GCA_963573255.1
- Location
- OY754305.1:8720874-8723123[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.9e-07 0.0014 18.5 0.0 1 41 260 301 260 304 0.92 2 3 0.00016 0.26 11.2 0.0 8 35 315 341 313 350 0.86 3 3 2.9e-09 4.6e-06 26.4 0.0 2 38 368 403 367 409 0.92
Sequence Information
- Coding Sequence
- ATGTCTTTCGTAATTAACACGcgaattgacaaaaataaggaatttCTCGACGCATTGCGGCATTCATGGGCAAATGAATTGGATAAAGatgtcaatttaatttgtaaggATAATATTGCTATTAAAATCAACAGTTATGTCCTGGCATTGGCTAGTGaGTTTTTCAATACACTTTTGAAGAATATTGTCGAGAAGCGGGAAGTTATAAATATAATTGTGCCTGACATGGATCCAGACATCATGCGGAAGGTGGttgaatatatttatattgGATATGTGTCGCTGGAGACTAGGCTGATGGGAGAATTCATCGAAGCCTGCAACCTCCTCCATCTCAAAGCCACAATCAGCTGCGAGAAGAAGCTCGTCTTCGACAGTCCAGTTGCTGCAACCTCAGCACAACCCAACATCACTACAATGATTGAAGATTTTAGCACAGACATTAAGTACACAACAACGACCGAGGACAACACCGACTATGAAATGACCCAAAAGTCGACAGCCGGTGAGCAACAAATTCTAGAAGTTTATGAGATTTCAAATATTGAGGATACGGACATTGCATATGAGGATGCTATGGATGAAGATGAGACAGTTGAGGAACATTTTGAATTAGTTAATGTCATACCGGAATCTGAGGCATCACCCACAATGGCTGTTGATACACCAAATGAGGTTGTTAAAGTTAAACaggataagaagaagaaaattgttatgGAACCGGTGGAATTGAGAAGCAGCAAAACGTCAACACCAAaattgaattccaaaaatgtcGATGAGACGATCATGCAGCAGGCGGTCAATGAGATTTTGTCAAATAGCAGCAGCTTCCGTCTTGTCAGCGAAAAGTACAACATCCCAAAGACCCTCCTCTGGCGTCGCGCAAAGAAACTCGGCTACGTTAAAACTGAAAAACAGAAGGACGACATTCGTGTAATGGCAATTGAGGCAATCAAACAAGGTGAGAGTCTAATTAGCCTCAGCAAGCGCTACAATATCCCAATATCAACCTTGCATCGAGagaaattaaagctttatgAGAAAGGTCAACTGCCAGAGAATGTAAACTTGAAGAATCGGTCAAGAGGTGAGGATTATGATGACAGATTAAGGAACGCTATAACTGAGATTCTGAATGGAAAAAGTCAAAATGAGATTGCTAAAAAGTACAGCATACCGAAGACGACAATTTGGAGGATAATTAAAAAGATGGACTCGAAAAGTGAAGGATCAGGAACACCAGTGACGCCAAATTCAGAGATTGTTGAGCAACTGATGCAGTTGAGTAAAAAGAGGATGGTTAAGGATGATTCGAGCTTTGAAGACGATAAatag
- Protein Sequence
- MSFVINTRIDKNKEFLDALRHSWANELDKDVNLICKDNIAIKINSYVLALASEFFNTLLKNIVEKREVINIIVPDMDPDIMRKVVEYIYIGYVSLETRLMGEFIEACNLLHLKATISCEKKLVFDSPVAATSAQPNITTMIEDFSTDIKYTTTTEDNTDYEMTQKSTAGEQQILEVYEISNIEDTDIAYEDAMDEDETVEEHFELVNVIPESEASPTMAVDTPNEVVKVKQDKKKKIVMEPVELRSSKTSTPKLNSKNVDETIMQQAVNEILSNSSSFRLVSEKYNIPKTLLWRRAKKLGYVKTEKQKDDIRVMAIEAIKQGESLISLSKRYNIPISTLHREKLKLYEKGQLPENVNLKNRSRGEDYDDRLRNAITEILNGKSQNEIAKKYSIPKTTIWRIIKKMDSKSEGSGTPVTPNSEIVEQLMQLSKKRMVKDDSSFEDDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00319882;
- 90% Identity
- iTF_00320857;
- 80% Identity
- iTF_00320857;