Crip017983.1
Basic Information
- Insect
- Chironomus riparius
- Gene Symbol
- NFXL2
- Assembly
- GCA_001014505.1
- Location
- JXPV01009052.1:1-5193[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.1 1e+04 -3.3 0.8 15 18 71 74 71 75 0.67 2 12 0.31 2.9e+03 -1.5 1.2 14 19 123 128 123 128 0.86 3 12 1.3 1.2e+04 -3.5 0.4 4 10 159 165 159 165 0.65 4 12 1.3e-07 0.0012 18.9 15.4 1 19 173 190 173 190 0.99 5 12 0.79 7.5e+03 -2.8 1.2 5 10 215 220 215 220 0.87 6 12 6.4e-05 0.61 10.2 15.8 1 19 226 245 226 245 0.97 7 12 1 9.7e+03 -3.2 1.3 10 14 252 256 250 256 0.71 8 12 0.16 1.5e+03 -0.6 1.2 5 10 269 274 269 274 0.91 9 12 4.6e-07 0.0043 17.1 11.8 1 19 280 298 280 298 0.97 10 12 7.8e-07 0.0073 16.4 10.6 1 19 335 352 335 352 0.97 11 12 2 1.9e+04 -4.3 14.9 3 19 388 403 386 403 0.89 12 12 0.0014 13 6.0 3.2 1 7 412 418 412 420 0.93
Sequence Information
- Coding Sequence
- ATGGAATTATTAAAGGATAGAGTAATGCAAATCGATAGCTCTGATGATGAAGATTCATCGCGAGttggaaaggaaaaaattgcaagcctcttcaaaaattatcaaggaaaTGATAATGACGTGGCAAGAATACAGCAATATTTTGATGGTGAGAATCTGGACTGTCTGATTTGCATTAGAAGTGTAAAAGCTAAAGATCGAATTTGGACTTGCGGTACATGCTATCTTTCGTTCCACTTACTCTGCATTCAAAAATGGGCTAATGACTCGATGAACTTGAAAAAACTTTGGCATGACAATCAGCCTAGTGGTTACTATGACAATCAAGGAAATTATATTCgtaaaaaggaattgaatgtGTTTTGGGATTGTCCAGCATGTCGTCATGAGTACCTCGAAAATGAGATACCAAGGGAGTATTCATGTTATtgtaaaaaggaaattgatcCAGAATATCAAGAATGGCTTGTTCCTCACAGTTGTGGTATGATGTGCCAGAAACCACTAGAAACTTTATGTGGACATAAATGCACAATTCTTTGTCATCCTGGAAAATGTCCTAGCTGCCCTCAAACAATTCAAACGAGCTGTAAATGCGGTAAATCCCCAATTAAGACCATTCGATGTTCCCAAAAAACTTGGAATTGTTCTCAAAAATGCACTAAGATCCTCGTATGTGGTGTTCATAAATGCTCAGGAGTCTGTCATGGTCCCAACGAATGTCCACCTTGTAAAgaaaaaagtgtcaaaaactGTCATTGCGGAAACAAATCAAAAGAGATAAAATGCGAACAATTATCATGGAATTGTGAAAAAGTGTGTGGCAAGCCTTTAAGTTGCGGAATTCACAGCTGTGACAAGAAATGTCATAGTAATGATTGTGGTGAATGCAAATTTGGACTTGAAAGGAGCTGTTTTTGTGGTAAACAAAAAGTCACAGTATCAAAATGTGATGAATCTTCACTGGATTCTTGTGGTGATACCTGCTTGAAACAACTATCATGTGGACACATCTGTTTATCGAGATGTCATAAAGGAGACTGTGACACGTGTAAGGAACAAGTTGAGAAAAAATGCAGGTGTGGTACAATGTCCAAATTATTTCCATGTTCAAAGGAACTGTTATGTGAGACTAAGTGCAATAGTCAAAAGTCTTGTAAGAAGCATTCCTGTAAATCTAAATGCTGTGTTGAATGTGCTCCCTGTTCAATAGTTTGCGGAAAGGTACTAGCTTGTGGACGACATAAATGCGAAGGTACGTTTACATTTTAg
- Protein Sequence
- MELLKDRVMQIDSSDDEDSSRVGKEKIASLFKNYQGNDNDVARIQQYFDGENLDCLICIRSVKAKDRIWTCGTCYLSFHLLCIQKWANDSMNLKKLWHDNQPSGYYDNQGNYIRKKELNVFWDCPACRHEYLENEIPREYSCYCKKEIDPEYQEWLVPHSCGMMCQKPLETLCGHKCTILCHPGKCPSCPQTIQTSCKCGKSPIKTIRCSQKTWNCSQKCTKILVCGVHKCSGVCHGPNECPPCKEKSVKNCHCGNKSKEIKCEQLSWNCEKVCGKPLSCGIHSCDKKCHSNDCGECKFGLERSCFCGKQKVTVSKCDESSLDSCGDTCLKQLSCGHICLSRCHKGDCDTCKEQVEKKCRCGTMSKLFPCSKELLCETKCNSQKSCKKHSCKSKCCVECAPCSIVCGKVLACGRHKCEGTFTF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -