Crip012461.1
Basic Information
- Insect
- Chironomus riparius
- Gene Symbol
- stc
- Assembly
- GCA_001014505.1
- Location
- JXPV01018809.1:290-2692[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.1 1e+04 -3.3 1.1 15 18 283 286 282 287 0.81 2 12 0.68 6.4e+03 -2.6 0.4 4 10 316 322 316 322 0.82 3 12 0.011 1.1e+02 3.0 8.5 4 14 330 340 328 345 0.86 4 12 2.6e-08 0.00024 21.1 12.8 1 19 381 399 381 399 0.97 5 12 1.1 1.1e+04 -3.3 0.4 6 10 429 433 428 433 0.85 6 12 6.6e-10 6.3e-06 26.2 12.3 1 19 439 457 439 457 0.98 7 12 0.014 1.3e+02 2.8 11.5 4 18 505 519 498 520 0.89 8 12 1.7 1.6e+04 -3.9 2.0 5 10 547 552 547 552 0.91 9 12 0.00035 3.3 7.9 8.0 1 11 558 568 558 569 0.97 10 12 0.077 7.3e+02 0.4 1.0 4 10 573 579 572 579 0.92 11 12 2.4e-06 0.023 14.8 14.2 3 18 587 602 585 603 0.91 12 12 2 1.9e+04 -6.6 7.8 9 13 649 653 632 654 0.64
Sequence Information
- Coding Sequence
- ATGTCGCCTATTTCGATAAACGAAGAAAAATCTGCAACGAGTTCAGAATTGAATGTTGAAGCAAAGGAATTTTATCCACTAAGCACCAATAATCACGAATCTGGTGAATCCAGTAATGCAGGAGTGAATTCGAAAGGCTCAGGTGCTGttccaaaaaagttttatgaaaaaaggaACAATCAACCTcgttcaaagaaattttatccAGACAACCAGAGGAACTGGCGAAATAATGAGAACCGAGCTAGCTATGGAAGTAATGAGCATAGAAATTATGGAAGTAATGAGCATAGAAATTATGGAAGAAGCAACAGAAGAAATGATGcagaacacaaaaataatgaagagggtagagaaataaaaaaaaataacgaagaAAAGCAAgagagaaagttttttaagaataacCAGCACAGCTATGATCGTAGAGGTGGAAATAATGGTTATACGAGCAAgtttaaaatcacaattaaGCCTGACAATAATAAGAAACCAGAGCAGTCTGATAATGGAAGTAAAATAGAATCCACTAGCAAATCTGAGGAGATCCCATCAACATCTAATGAAGGACCAAACATCCAGCACAAACCGAAATACAATAATGATTACAAAAATCATAGAAAACGTCCACAGACAAAAAGGCctgttaataaaatttcaatttcacaacGTGAGCAATTGATAAAAGAAATAGAAAGGAACACATTGGAATGCATGATTTGTTGCGAGAAAATTAAGGCTTATAATCCAATTTGGAGTTGCTTGGTCTGTTATCATATCTTACATCTTAATTGTATCAAAACATGGATGAAGAAGTCAATTGAATCAAGTGAAGATGGATTTAGATGTCCAGCATGTAATCAAATAGCTAAAATTAAGCCAGGAGAATATTTGTGTTTCTGTGGAAAGCTAAAGAATCCTCCACTTAATCGCAACGATCTTCCTCATTCCTGTGGAAATATGTGCCTAAATACATCAAACTGTGACCATCCTTGTAATTTAGTTTGTCATCCAGGAGCTCACGAAAAGTGCTATGCTGTTGTCAACAAGTTCTGCGGATGCGGACGTACGTCAAAGAACTATCAATGTAGCATGAAAGCAACTTTTGAATGTGATTCAATTTGtgagaaagttttaaattgtgGAGTCCATAAGTGCCCTAAAGTATGTCATCAAGGCGATTGCGAAGATTGCTCAGAAGAACTAGAATGTAACTGCTATTGTGGAACTGAAAGTAAGAAGATACTCTGTACAGTCGAAAACATTGACAAGACTAAATATTCATGCGATAATGTATGTGGAAAGACTTTAAATTGTGGCAATCATAAATGTGCTGAAAAGTGTCATGACGGTGCTTGTAAATCATGTAAATTAATGCCTCAATATGTCAAAACATGTCCATGTAGCAGAATGTCAATCAAAAGTGAAACTCGAAAGACATGCTTAGATCCAGTTCCATTATGTGATTCAGTTTGTAAAAAAGCACTCAAATGTGGTCCTTTATCATCTCCTCATCTCTGTGCCTCACAATGTCATTTAAACGAATGTCCACCGTGTGGACAGACAAGCAACATCAAGTGTCGTTGCGGACgaaaagaggaaaaagttCCATgcaaagatttattaaatacaGACatgagatgcaaaaaaaaatgtaataaatttaagagttgtggacgtcataagtgtaATAATGTATGCTGTATAGACATAGATCATACGTGCATGCAAAACTGTAATCGAATGTTGGACTGTCAATTGCACAAGTGTCAAAGAACTTGTCATATTGGAAATTGTGCTCCATGTCATCGTGTctcttttgatgaattaagCTGTGAATGTGGACAAACAATTGTGTACCCACCGGTTCATTGTGGAACTGTGATTAAAGACTGCTCAAATAAATGCACTCGTAGACATAAATGTGGTCATCCTGTTGGACATAATTGTCATTCCGGTAAGAATAATTTGAgtgttattattttaaaccTGCTAAGgatcgttaaaaatttgaattga
- Protein Sequence
- MSPISINEEKSATSSELNVEAKEFYPLSTNNHESGESSNAGVNSKGSGAVPKKFYEKRNNQPRSKKFYPDNQRNWRNNENRASYGSNEHRNYGSNEHRNYGRSNRRNDAEHKNNEEGREIKKNNEEKQERKFFKNNQHSYDRRGGNNGYTSKFKITIKPDNNKKPEQSDNGSKIESTSKSEEIPSTSNEGPNIQHKPKYNNDYKNHRKRPQTKRPVNKISISQREQLIKEIERNTLECMICCEKIKAYNPIWSCLVCYHILHLNCIKTWMKKSIESSEDGFRCPACNQIAKIKPGEYLCFCGKLKNPPLNRNDLPHSCGNMCLNTSNCDHPCNLVCHPGAHEKCYAVVNKFCGCGRTSKNYQCSMKATFECDSICEKVLNCGVHKCPKVCHQGDCEDCSEELECNCYCGTESKKILCTVENIDKTKYSCDNVCGKTLNCGNHKCAEKCHDGACKSCKLMPQYVKTCPCSRMSIKSETRKTCLDPVPLCDSVCKKALKCGPLSSPHLCASQCHLNECPPCGQTSNIKCRCGRKEEKVPCKDLLNTDMRCKKKCNKFKSCGRHKCNNVCCIDIDHTCMQNCNRMLDCQLHKCQRTCHIGNCAPCHRVSFDELSCECGQTIVYPPVHCGTVIKDCSNKCTRRHKCGHPVGHNCHSGKNNLSVIILNLLRIVKNLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -