Basic Information

Insect: Chironomus riparius
Gene Symbol: -
Assembly: GCA_001014505.1
Location: JXPV01007844.1:2473-6309[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 6.2 3.8e+02 2.0 0.5 1 23 206 229 206 229 0.91

2 10 0.058 3.5 8.4 5.1 3 21 424 442 423 444 0.93

3 10 0.027 1.7 9.4 3.3 2 23 460 481 460 481 0.96

4 10 6.2 3.7e+02 2.0 2.6 2 23 523 546 522 546 0.90

5 10 4.1 2.4e+02 2.5 1.5 8 23 560 576 559 576 0.93

6 10 0.086 5.2 7.8 0.8 1 21 585 605 585 606 0.94

7 10 0.0019 0.11 13.0 0.8 2 21 613 632 612 633 0.94

8 10 3.8e-05 0.0023 18.4 2.0 1 23 640 662 640 662 0.99

9 10 0.0016 0.096 13.3 0.2 1 23 668 690 668 690 0.92

10 10 2.8e-06 0.00017 21.9 3.1 1 23 696 718 696 718 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	6.2	3.8e+02	2.0	0.5	1	23	206	229	206	229	0.91
2	10	0.058	3.5	8.4	5.1	3	21	424	442	423	444	0.93
3	10	0.027	1.7	9.4	3.3	2	23	460	481	460	481	0.96
4	10	6.2	3.7e+02	2.0	2.6	2	23	523	546	522	546	0.90
5	10	4.1	2.4e+02	2.5	1.5	8	23	560	576	559	576	0.93
6	10	0.086	5.2	7.8	0.8	1	21	585	605	585	606	0.94
7	10	0.0019	0.11	13.0	0.8	2	21	613	632	612	633	0.94
8	10	3.8e-05	0.0023	18.4	2.0	1	23	640	662	640	662	0.99
9	10	0.0016	0.096	13.3	0.2	1	23	668	690	668	690	0.92
10	10	2.8e-06	0.00017	21.9	3.1	1	23	696	718	696	718	0.97

Sequence Information

Coding Sequence: atgcaaaattcagCACAGgagttttgttcattttgCTTAAAATCAAGGAATGAAGTCGATATTAtagacacaacaaaaaattcactgCTAATAGACAACAAGTGCTATGAGTTTTCGtacattttcaatgatttacTTCAATTTACTaGCTCTGATGAGTGTATATGCGAGATGTGTAAAGATTTGATGGTCAGCTTTTATCTGTTCAAgagaaacataaaatttccacATAATCACATCTTTAGAATGctgataaaaaatcaaattgaagagTACCTGAATACTTTCGTTGATAATATAGAAGATATAAAGGTAATAAGGACGGTTAATGCTATAACATTGGAAATAcagcaaaatgaaattaagattgAGAACAAACCAGACATAAGCGAAGAAGTTGAGGAACAGGAATACGAAGAAAATGCAACAACTGAGGAAATGGGATatgaaacattaattaattaccaCTGCCCTAAATGTGAAACAATTGAGCCCACCGAAAATGATTCGGAAATTCACGAGTTTTTAAGGCATTCAACCTTTGGAGCTCAACTGGAggttgaaattgaaaactcGAAAGTATACAGTGAATCGACAGACATCGAGGATACGTTTTATGTCTGCGGATTTTGTACCTCACACcttgaaagttttgatttattgctgCTCCACTTGTTGAATGTCCACAACCCAGAAGTTTTGTTTCAAATAAATGAAGCATTGAACATTCCATCACATCTTATCGAATTCCCAACAATTAACGGTTATCTCAATTATATTAAAGAATGTCTACATCACgataataaaatgacaaaCTCAGTCGATTatgaactcaaaaaatatttttatgaagtcTATGGAGAAATGGATGAGATGAGTAATGCTTCAGAAAAGGATATGCAGGAACAAGAGATTGAAATTAGTGAAATGAATGAAGCAATTACTGAATatgatgacaataaaattaagaaggaTAAGCAGGAGAAGTTAACCGAAGACTTGagtttaaatgataaagaatggGTACGGAATCAAATCACGAAAAGCAAGCGTTATGTTAATACAGAAACTGGTGAAAAACGAGTCGTTTATCAATGTGATTTATCAGATTCCTGCAGGCATATCTCAAATTCAGCACCTGGACTTCgatatcatttaattaataaacatttgaaaCATCGAAAAGAGTTTGAGGATCGAAAACGCCGTGACTCTAATGAGCTTATTGAAACATACCCATACATTACCAAAAATTCTAGTAAAAATTGCTGCAATGACTGTGGTTTAAAGTTCAAAGATCAACGTGCTTATCAGTTACACGAACGGTGCCATGAACTTTTCAAAACCGTCGCTAATCATTCAGATTCAATATTTCCTTCCTGCAATACatgcaatcaaaaatttttaaatgaagatcTCTTACAGCACCATTTGAATAAGCATGATAAGAATGAAAACTTATCGGAAGCTATTGAAACAGAAATTGGTGCAATTAGACAGCAAGGAAAAATCTTTACTAATTTTATTCGATCTGATGGAGAGACAGGCCTGACAGATTATACATGGAAATGTGGACATTGTGACAGTAAGAATTTTTCGaaggaagaaaattgcaaTCTGCATCTACTTTTAGTTCATACAGTGTCATTTGTATGTCCAATtgataaaatggaatttaaaggCTTCAAATCtgtttcactttttattcatcatttgaGAAATAAGCACTCAGAATTATTCcctaatttatcatttaattgcACGTTCTGTCAAAGGGAATTCCCaacaatttatgataaattaaatcacatgaaaaattgtgatcGTAAGAACTTACAGTGTGATCATTGTGGCAAGAGGTTCTGGAAAAAAGGAGACTTGTTAACACATTTAAAGTACGTGACTGGCGAGGTACAATTCAAATGCTCTGTCTGTACCAAAAAATGCATCTCGGCTAGCGACTTGAGTATTCATCTTCGATCTCACAGTAAAATTAAGCCATACAAATGCTCACTATGTACAAAAAGCTTCCGTACTTTGGCAGCAAGAGCCGCACATGTAGATGCACACAACGCGAATTTGATGTTTTCATGCGAGATCtgtaaaaaatcatttaagcAACGACAACTTTATCGTCGACATATGAAGGCACATGAAAGTAAAGGTGACATAagtagataa
Protein Sequence: MQNSAQEFCSFCLKSRNEVDIIDTTKNSLLIDNKCYEFSYIFNDLLQFTSSDECICEMCKDLMVSFYLFKRNIKFPHNHIFRMLIKNQIEEYLNTFVDNIEDIKVIRTVNAITLEIQQNEIKIENKPDISEEVEEQEYEENATTEEMGYETLINYHCPKCETIEPTENDSEIHEFLRHSTFGAQLEVEIENSKVYSESTDIEDTFYVCGFCTSHLESFDLLLLHLLNVHNPEVLFQINEALNIPSHLIEFPTINGYLNYIKECLHHDNKMTNSVDYELKKYFYEVYGEMDEMSNASEKDMQEQEIEISEMNEAITEYDDNKIKKDKQEKLTEDLSLNDKEWVRNQITKSKRYVNTETGEKRVVYQCDLSDSCRHISNSAPGLRYHLINKHLKHRKEFEDRKRRDSNELIETYPYITKNSSKNCCNDCGLKFKDQRAYQLHERCHELFKTVANHSDSIFPSCNTCNQKFLNEDLLQHHLNKHDKNENLSEAIETEIGAIRQQGKIFTNFIRSDGETGLTDYTWKCGHCDSKNFSKEENCNLHLLLVHTVSFVCPIDKMEFKGFKSVSLFIHHLRNKHSELFPNLSFNCTFCQREFPTIYDKLNHMKNCDRKNLQCDHCGKRFWKKGDLLTHLKYVTGEVQFKCSVCTKKCISASDLSIHLRSHSKIKPYKCSLCTKSFRTLAARAAHVDAHNANLMFSCEICKKSFKQRQLYRRHMKAHESKGDISR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00321215;
90% Identity: -
80% Identity: -