Crip000217.1
Basic Information
- Insect
- Chironomus riparius
- Gene Symbol
- -
- Assembly
- GCA_001014505.1
- Location
- JXPV01021858.1:58105-59450[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00026 0.015 15.8 0.2 3 23 149 170 148 170 0.97 2 9 5.5e-05 0.0033 17.9 0.6 1 23 176 198 176 198 0.99 3 9 0.015 0.91 10.2 0.9 1 23 207 230 207 230 0.97 4 9 0.0019 0.12 13.0 4.9 1 23 237 262 237 262 0.94 5 9 3.1e-05 0.0018 18.7 6.8 1 23 267 290 267 290 0.96 6 9 0.00028 0.017 15.6 0.2 2 23 297 318 297 318 0.97 7 9 0.031 1.9 9.2 4.5 4 23 325 346 323 347 0.87 8 9 0.0019 0.11 13.0 1.2 2 23 355 377 354 377 0.95 9 9 0.019 1.1 9.9 0.2 2 23 383 407 382 407 0.94
Sequence Information
- Coding Sequence
- ATGAACGAGACATTATTGGACCTTGCAAATTGTTGCAGATGCTGCTTGAGAGGATTTAATACTGATGAAGTTGCAGTTGCCATTGATGAGACGCTTAGGAATAGCTTTTTTGAGATTACTGGCATGGAATTAACTAATGATTCTGAAGTCTATTCAGATATTGTCTGTGATTATTGTAGCAACAAgataaatgattttgttgCCTTCAAAAACGAATTAATCGAGTCACAAAACACTTTACTGGATGTTAGAGATGGATATATGGAAGTACTAGTCGATGTTAATGATGAAAGTAAGCCTGAAGTTGTGGAAATAGTTGATAATTATGAATCAGAAAAGATTGAATGTATAATTGAGACTTCAGATAACgaaatcataaaaagtgaAGCAGTATCGTTCTATGAAAATGAGATCCAGCAACCGAAGAATCATCAAGGAAAAGATTGTTATATTTGTGGAATGTCGTTTTCTGGCATGAGTGGATATTATAACCATATGAGAAGAGTTCATTTCATTGGGAAACAGTACTATTGCGATATTTGTGGAAAAAATAGTAATATAAAGAATGACTTATTAATGCATATGAGGAAGCACTTAAGTAAGGCAAGTcgagaaaagttttcatgttCTTTTTGTGATACTGCTGTTTTATCAAAGACAGCACTTACAAATCATCTTAAGACGTTTCACTCGGACGTCATTGAAATACATCCATGTGACTACTCAAATTGTGATAAGCACTTTACGACTAGGACAAAATTATTACAGCATAGGAAGAGTGTCCATGACACTGGAAAATTTCCTTGTGATTATTGTGAAAAGCACTTTACGACCAAACAGTATCTCCAAAAGCATATTAAGCAGTGCCACACAGCAAAAATTTTAGAGAGTTGTGAGATTTGTGGGAAACAATTTCCAAAAGGCATTCAAATTAAGAGGCATATGCAGATCCACGATGAAAAGCAGCACTGCTACTATGAAAATTGCGATAAAGTCTTTCAATTCAAAACCTCTCttttaaatcacattaaatTCCATCACACAAAAAACGATGCTACAGTTCCATGCAGTCAAtgtcaattgaattttccGACCATTAAGCACCTTAATCGGCATGTTAGTCGACAACATAATGATATAAGAGTACAATGCGAAGTCGATGGATGTCAACAATTGTTTGGACGAAAGGATTACTTTGTTAAGCATTATAAAGTACAGCATCGAGAGCTTGATGAGGAGACAAGAAACAGTTATATTGATAAAGTAAAGCACATTAAAGTCATTCCTTGGTAA
- Protein Sequence
- MNETLLDLANCCRCCLRGFNTDEVAVAIDETLRNSFFEITGMELTNDSEVYSDIVCDYCSNKINDFVAFKNELIESQNTLLDVRDGYMEVLVDVNDESKPEVVEIVDNYESEKIECIIETSDNEIIKSEAVSFYENEIQQPKNHQGKDCYICGMSFSGMSGYYNHMRRVHFIGKQYYCDICGKNSNIKNDLLMHMRKHLSKASREKFSCSFCDTAVLSKTALTNHLKTFHSDVIEIHPCDYSNCDKHFTTRTKLLQHRKSVHDTGKFPCDYCEKHFTTKQYLQKHIKQCHTAKILESCEICGKQFPKGIQIKRHMQIHDEKQHCYYENCDKVFQFKTSLLNHIKFHHTKNDATVPCSQCQLNFPTIKHLNRHVSRQHNDIRVQCEVDGCQQLFGRKDYFVKHYKVQHRELDEETRNSYIDKVKHIKVIPW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -