Crip016471.1
Basic Information
- Insect
- Chironomus riparius
- Gene Symbol
- -
- Assembly
- GCA_001014505.1
- Location
- JXPV01001292.1:19048-22889[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.52 31 5.4 0.6 1 23 156 179 156 179 0.96 2 17 0.47 28 5.5 0.0 3 23 219 240 217 240 0.93 3 17 0.038 2.3 8.9 2.3 1 23 278 301 278 301 0.97 4 17 0.00037 0.022 15.3 3.1 1 23 408 430 408 430 0.99 5 17 0.04 2.4 8.9 0.1 3 23 439 460 437 460 0.96 6 17 0.098 5.9 7.6 0.2 1 23 469 492 469 492 0.93 7 17 1.3 77 4.1 1.6 2 23 508 530 507 530 0.95 8 17 0.00019 0.011 16.2 1.1 2 23 535 557 534 557 0.97 9 17 0.47 28 5.5 2.2 2 23 605 626 604 626 0.95 10 17 0.73 44 4.9 2.0 1 23 632 654 632 654 0.96 11 17 0.0063 0.38 11.4 0.8 2 19 663 680 662 685 0.89 12 17 0.0014 0.082 13.5 0.0 1 23 691 714 691 714 0.96 13 17 0.0014 0.084 13.4 1.1 1 23 722 744 722 744 0.97 14 17 3.8e-05 0.0023 18.4 2.4 1 23 750 772 750 772 0.98 15 17 0.018 1.1 9.9 8.7 1 23 780 802 780 802 0.98 16 17 1.8e-05 0.0011 19.4 1.2 1 23 808 831 808 831 0.97 17 17 0.00017 0.01 16.3 0.6 1 23 837 859 837 859 0.97
Sequence Information
- Coding Sequence
- ATGGACGACCTCTGCAGGATCTGCCGCAAAGATTGCTACAACAACTCAACAAGCATCAAATCCAAACACGAAGGAGTTCCAATATCAGAAATGCTCACCAAAACATGTCCAATTGACATCACATTCGATGATCCAATCAGCCAACTTCTCCCAAAATCTATCTGTAATGACTGCCTTGAAGTCATCTCAGCAGCTTTTAATCTCCAACGAGTGTGCATCGAAAGTGATCAGTACTTCCGTTCGATGATCTCAAATGATCAAATTGTAGTTAAGGATGAGTTTGAGATTAAGGAAGAAGAGCTTCCAATTCCTGATGATATTGAGGTCATTAGTGATGGTGAATATCATGAGCAGGAGACAGAGCATGTGACCTACTTAGTTCCAGTtaataaaaagaggaaaattgcAGCAACAACTTTTAATCCAAGATTAGTTCAAAGCACAGGAAGACGTTCCGACTCACATTATGAATGCAACTTCTGCCTCATTCAAACTAAGCCAAGACAAGCAATGTTAAAGCACATGAAACAGGAACATGATCCAGCATTTCTGCCATACGGATGTGACTTCTGTGCTGCACGGTTCAAAAGTGaggacaaaaaatatttacatgagAATGTACGGCACATAAATGAGTTCCCAGAGGCAATAATCTGTGAGGTTTGTGGAGTAAACGGAATCAGCGAAGAAGGAATGAAGAACCACATGAAGGATGaccacaaaatatttaaaccaaGTAAAAGGAAGAGAGATGAAGATGAGGAGGATGGCAAGACAACGAATTTCAATCCTAGGCCACTTAATAAGGGTGCAAGGTACGATGACATGTTCTATTCCTGCAACTTTTGTGACATTAAACAAAAACCTAGAAAGAATCTCCTTCGTCACATGTACACAAAACATGACCCAATCACTCATCCATTCTTTTGCAGCTTTTGCATCTTACGCTTCAAGGAAGAGTCAAAAAAGTCATCACATGAGAATACTCACGACCCAAGTGagccaaaaatattcatttgtgAGGTTTGTACAGCGACTGGAGACAGGGAGATCGGAATGTTGCAGCATAAAATGGATGATCATGGGATGAACGTGAGGATTCCAGTGacatttgaatcttttgagtCTGAAGAACCTTCAAAAGACAAGAAAAAGTCAGAAAGACATTTCCATCCACGACCACTTGCAGGAAGTGAATCCTTAGAATATGAAGACATTTGGTATACCTGCAACTTCtgtgataagaaaattaagcCTAAAAAGAGTATGTTGAGGCACATGAGAAAGCACAGTGCTGCTGCATATCCATTTGGATGTGAATATTGCATTGAGAGATTTGAGGACAAAGATGAGTTTGAAGCTCATTATAAGTATGTCCATGTAAATGAGACAGACACACTGATTTACTTCTGTGACCTCTGCGGAGCATCAGGTGACCATAAAGAAGGCATGGAGAATCACATGACTGACGATCATTTAATGATGgaacaacaatttaaaatcacaaagaaGCGGGAAATTAAATGCTCAATTTGCTATGCCAAGTTCCTCCATAAGCGTGGACTCGACAATCATCTGCTGTCGAAGCATAAAGAAACTACAAAATGTGACAAATGTGATGCTGAATTCAGTGACAAAAGGGAAATGAACCATCACATAATGATGATCCACAGTAAACTATATCGACAAGTCGAGCCACATGAAGTTGAAGTCAGCTACAAGTGCTGTAAATGTGAGCAAGATCATCAGTCAGAAGCTGACCTAGATCAACATTTAGAAGGCCACAGGAACTCCTTCAAAACTGAAAAGACTAAATGTCATTTTTGTCccaaaaacttaaaagattTCATCGAATTTTTAGAACATGCCAAGTACCACGCACAGCCACAGACTCACGAGTGCTTAACCTGCAAGAAAAGACTTCCATTTGACGACAAGCTACTGAATCATGTCAAGAATCATAAGAGGTATGATTGCTATAAAGTTGAGTGTAAGAAGTGCACACAAAAGTTCAGATCAGCTAAGGATTTGGAGATCCATGATAAGGTTAAGCACAATAAGGAGACGCTGTTTATATGTCCAATTTGTGCGAAGTCTTTAAGTTCGGCTAATGGATTGGATCAGCATATAAGATACGTCCACAATAAAGAACAGGAAAAGAAGTTCCAATGCAAATTCTGTCCAATGAAGTTCATCCTTAAAACCAAACTCACAAGACATGAAGCAGTCCACAGCACCGAACGACCTCATGTTTGTGAAATTTGTGGAAGCTCATTCAAGCACAATGAGGGACTGTCGTTGCATATGAAGAGACATAATGGAACTTTAGAAAGGAAGCATGAATGCTCACAGTGTAGCCATAAATTCACGACGAAGCATCGATTGGATCAACATATGATGACACATACTGGATTGAAACCACACGAATGTAAATTCTGTGATCGAGCTTATGCATCGAAAGGAGACTTGGTGAAGCACATGCAGAAGCTTCATGTTGGCGATGCAATTTATCAGTGTGACAAGTGTCCAAAAGCATTCCGAGTTATTGTGGAACTTAGAGAACATCAGCATGAGCATGGAGGGAATCAATACTTAGGATAA
- Protein Sequence
- MDDLCRICRKDCYNNSTSIKSKHEGVPISEMLTKTCPIDITFDDPISQLLPKSICNDCLEVISAAFNLQRVCIESDQYFRSMISNDQIVVKDEFEIKEEELPIPDDIEVISDGEYHEQETEHVTYLVPVNKKRKIAATTFNPRLVQSTGRRSDSHYECNFCLIQTKPRQAMLKHMKQEHDPAFLPYGCDFCAARFKSEDKKYLHENVRHINEFPEAIICEVCGVNGISEEGMKNHMKDDHKIFKPSKRKRDEDEEDGKTTNFNPRPLNKGARYDDMFYSCNFCDIKQKPRKNLLRHMYTKHDPITHPFFCSFCILRFKEESKKSSHENTHDPSEPKIFICEVCTATGDREIGMLQHKMDDHGMNVRIPVTFESFESEEPSKDKKKSERHFHPRPLAGSESLEYEDIWYTCNFCDKKIKPKKSMLRHMRKHSAAAYPFGCEYCIERFEDKDEFEAHYKYVHVNETDTLIYFCDLCGASGDHKEGMENHMTDDHLMMEQQFKITKKREIKCSICYAKFLHKRGLDNHLLSKHKETTKCDKCDAEFSDKREMNHHIMMIHSKLYRQVEPHEVEVSYKCCKCEQDHQSEADLDQHLEGHRNSFKTEKTKCHFCPKNLKDFIEFLEHAKYHAQPQTHECLTCKKRLPFDDKLLNHVKNHKRYDCYKVECKKCTQKFRSAKDLEIHDKVKHNKETLFICPICAKSLSSANGLDQHIRYVHNKEQEKKFQCKFCPMKFILKTKLTRHEAVHSTERPHVCEICGSSFKHNEGLSLHMKRHNGTLERKHECSQCSHKFTTKHRLDQHMMTHTGLKPHECKFCDRAYASKGDLVKHMQKLHVGDAIYQCDKCPKAFRVIVELREHQHEHGGNQYLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00320955;
- 90% Identity
- -
- 80% Identity
- -