Basic Information

Insect: Chironomus riparius
Gene Symbol: -
Assembly: GCA_001014505.1
Location: JXPV01019121.1:11677-14798[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.23 14 6.5 0.1 1 23 226 248 226 248 0.94

2 7 2.4e-05 0.0014 19.0 4.4 1 23 479 501 479 501 0.99

3 7 2.7e-05 0.0016 18.8 0.3 1 23 507 529 507 529 0.98

4 7 3.2e-06 0.0002 21.7 0.6 1 23 535 560 535 560 0.94

5 7 8.6e-05 0.0052 17.3 0.9 1 23 566 588 566 588 0.97

6 7 1.2e-06 7.2e-05 23.1 1.7 1 23 594 616 594 616 0.99

7 7 3.2e-06 0.00019 21.7 0.6 1 23 622 644 622 644 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.23	14	6.5	0.1	1	23	226	248	226	248	0.94
2	7	2.4e-05	0.0014	19.0	4.4	1	23	479	501	479	501	0.99
3	7	2.7e-05	0.0016	18.8	0.3	1	23	507	529	507	529	0.98
4	7	3.2e-06	0.0002	21.7	0.6	1	23	535	560	535	560	0.94
5	7	8.6e-05	0.0052	17.3	0.9	1	23	566	588	566	588	0.97
6	7	1.2e-06	7.2e-05	23.1	1.7	1	23	594	616	594	616	0.99
7	7	3.2e-06	0.00019	21.7	0.6	1	23	622	644	622	644	0.97

Sequence Information

Coding Sequence: ATGAATACAAACGCTGatcaaatctattcaaataatttagtGAATCAATATCAAGCACATCTTTCAGAGAATACACTTGTAAATGTAATACCGTCATCGGCAAATCGAATTATTCACCAGACAACAAATAGTATTAATGGAGATGCAAATGATTTGAATGAGAGATCACTTGATTTATCTACGGATTATATGTCCAATGCAAACCTAAGTTCAAATGTAAATATAGTAAATTACTTGCCAAATTTACCCGtcacaataataaatacaaGCTCCGATCATATTCATCaccaaaatcatcaatatatTAAAAAGTGTGAAAGCATACTAAGCATACATCAGCCTAAGGAACAATCACACATGATACACATCTATGGAGACAGCAATATTATACAATCAACAGATTTGCCTGTCCTTACTCCACTTAAATATATGGAGTATCAAAATAATCTTAGCAGTATTGTCACGTCTGCTGGAACTGACGAGCAGCAAATCTTAATGAACAATGACGATGTCATGTCCGAAAAGAGTGATTGTGAAAGTATTCATGAACAACCGCTAAAGCAAAGTCTACCACATAAAAAACGAATagcaaagaaattgaattctgatgaattttcaatcatcCTGACTGATCCAGACGCAAATATTCGTGCACTTCAAGCTACAAACCCTCAATTTGAATGTATTGAATGTGGTTTATCGTTTATTGGtcaattggaattttatatGCATCTAAAAGAACATTATGAAGGTCAGTCATCGTCACTAATGCGACATACAAAACGAAAAAGATTTGCTCAACATGAAGAGTTGGAAATTCATGTGCATGACGAAGAAGATCCAAATTCAATTGctgagaatttaattattgaatctTTAGAGGATTCACAAGATGATATTAAGTCTGAAGAGATTGAAGGCGACGCTTTTGGGTTTAGTGAACCCGAAGACATGGAAGATTTTCGCAAGGAAGTAGAAAAAGTCGTTGAAACAATTGACGATACAGAATGTCTACCAGATTCTTCCTGGAATTATCAAGTATCGGACGAGATGGATGAAAGTCATACAAACGTTACAATTATGGAAAGCTATTCCGAGAAAATGGATAGTATCGATCAGTctaattattcaaatcaacAAGAGCTAAAATGTGATTCATATCTGTGTACGCAAGATATTAAGGATGATAACGATGTCGATGAACAtacaattttacattttactaATAATAGCAATGAACTAATTGACATTAAGCACGAAAGAATGAATGATCCAGCGATAATTCAACCAAGTGTCTTAGAAACAGATGAAGAGGATGAGAAGCCTCTCGAGGAAGTACGATTATTACTAAAGAAAACAAAGAgatatcaaaaacaaaaagttcaaaatgatGCAGAAGTTGAATTTAACGAGTGcctgaagaaaattcaaaattttaagtgtAATGATTGCAATAAATGCTTCAACTCAAGGACTGCACTAGGATATCACTTAAAAACTCACAGCAGTGAGCGAAGATATGTCTGTGATCAGTGTGGGAAGAAATTCTTAACAAACGGAGCATTAAAAGTACATTTAAGACTACACACCAATGATCGACCTTATAAATGTAATTTCCCTGATTGTGGAAAGTCGTTTAGACAATGGGGCGATTTGAAATATCATGAGACTAGTTTACATTCAGATAAGAAGGATCACATTTGTGAATTCTGTGCTAAAGCTTTTGCTAGAAAATACTCGTTAGTAATTCATAGGAGAATCCATACTGGTGAAAAGACATACAAGTGCACAGAATGTGACAAGAGTTTCCGAGCCTCATCTTATCTCCTTAATCAcaaACGTATTCATTCTGGCGAACGTCCATTCGCGTGCATGGTCTGTGGGAAAAAGTTTCGAGTTCAAGGGGATCTTAAAAGGCATACAAAAATTCACGATCGCGTTAAGAATGGTGTAgtgaaagagaagaaaaaagcaATTGAGCCTCAAGTTATATCCAACAATCAAGATATTAACAATGCAGCGggGAAAGAATGTGTGGACTTAAGCAAAGAGAAGAAAGCAATGGAAAACACGGATAGCAACTTTATAGAAAACCTTACGAAAAAAGGAATCGGCAATAATGAAGTTACGAAAAAGATTAAGAAAAgtcagaaaaagaaaaatgtcaagtag
Protein Sequence: MNTNADQIYSNNLVNQYQAHLSENTLVNVIPSSANRIIHQTTNSINGDANDLNERSLDLSTDYMSNANLSSNVNIVNYLPNLPVTIINTSSDHIHHQNHQYIKKCESILSIHQPKEQSHMIHIYGDSNIIQSTDLPVLTPLKYMEYQNNLSSIVTSAGTDEQQILMNNDDVMSEKSDCESIHEQPLKQSLPHKKRIAKKLNSDEFSIILTDPDANIRALQATNPQFECIECGLSFIGQLEFYMHLKEHYEGQSSSLMRHTKRKRFAQHEELEIHVHDEEDPNSIAENLIIESLEDSQDDIKSEEIEGDAFGFSEPEDMEDFRKEVEKVVETIDDTECLPDSSWNYQVSDEMDESHTNVTIMESYSEKMDSIDQSNYSNQQELKCDSYLCTQDIKDDNDVDEHTILHFTNNSNELIDIKHERMNDPAIIQPSVLETDEEDEKPLEEVRLLLKKTKRYQKQKVQNDAEVEFNECLKKIQNFKCNDCNKCFNSRTALGYHLKTHSSERRYVCDQCGKKFLTNGALKVHLRLHTNDRPYKCNFPDCGKSFRQWGDLKYHETSLHSDKKDHICEFCAKAFARKYSLVIHRRIHTGEKTYKCTECDKSFRASSYLLNHKRIHSGERPFACMVCGKKFRVQGDLKRHTKIHDRVKNGVVKEKKKAIEPQVISNNQDINNAAGKECVDLSKEKKAMENTDSNFIENLTKKGIGNNEVTKKIKKSQKKKNVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00320965;
90% Identity: iTF_00320965;
80% Identity: -