Crip005377.1
Basic Information
- Insect
- Chironomus riparius
- Gene Symbol
- -
- Assembly
- GCA_001014505.1
- Location
- JXPV01002509.1:6646-11373[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.02 1.2 9.8 2.0 1 20 153 172 153 174 0.93 2 11 1.1e-05 0.00067 20.1 1.5 2 23 184 205 183 205 0.98 3 11 6.6e-06 0.0004 20.8 0.2 2 23 212 234 211 234 0.95 4 11 0.0018 0.11 13.1 1.2 1 23 240 262 240 262 0.96 5 11 0.00024 0.014 15.9 0.4 1 21 282 302 282 303 0.95 6 11 0.028 1.7 9.4 0.4 1 13 316 328 316 339 0.86 7 11 0.43 26 5.6 3.1 1 15 371 385 371 394 0.72 8 11 0.0099 0.6 10.8 5.9 1 23 402 427 402 427 0.93 9 11 9.2e-07 5.5e-05 23.5 0.8 1 23 434 456 434 456 0.99 10 11 1.3e-05 0.00079 19.8 0.7 1 19 463 481 463 486 0.91 11 11 0.04 2.4 8.9 0.6 1 23 492 517 492 517 0.95
Sequence Information
- Coding Sequence
- ATGTCGTGGGATGAAAAGGAACTAGACTTTGAGGATCTAAATACTGAAATTGACCAACGATGTTCCAGTGATATATTAAGAGTATTTAAGAACAATCAAGGAGTTTGTCTctacaaactttttaatgacgATGAGTTTAATGAtgttattatgatttttaagctCATAATCAATAGGGAAATGGATGTAAAGATAATAAGTGATGAGTATGAATACAAGGATTTTGATAAACTTACTTCCTGGAATCAATTAAATGAGTTAATTGAGAAATACTTGCAAAATGATGAATCTCAAATGGTTTTTGAGGAATATGAcgaaattattgaagaatctaaTCCAGACATCGAATCTTTTGACACAGAAGAAGTCATAGAAACAGTGGCACTAGTTGAAACAGAAGAAATATTTGAGGACGAGTCAATGATCGATGAAATTGAGGCTGAAACGGAAAATCCATTTCAATGCACAAATTGTCATATAATCTTTAAGAATACGCTGGGTCTTAGACATCATTCACAAAGCTGTAACATCAAGAAATCTATAGTTCAAAAATGCACAATCTGTGATCAGAATTTCTCCTCAAACTTACAACTTCGACTACATATGAAAAGTCATGAGGATCAAAAGGGATTGAAATGTCCATATTGCACAAAAACAGTTGTTAATAATGGTAGCTTACAGAGACATATAAAAGCTATTCATCTGAAGCAACGACCACATAAATGCTCATTATGCGGTAAAGCCTTTGCAACATCAACGATAAGGAATGCACACGAAAGGACACATAATAGAAACTCTGaagtacaaaaatatttaagtagGGATGTCAATGGAACCGTTTGCTATCGATGTCCAAATTGTAATGATATTTTCGATACATCAGATCATCTTAAGAATCATATCGAAAAGAACTGCTATAGACCACGAAAGAAGCGTACTTATAAGTATCCATGCAGATATTGTGGAAAGCAATTTGTAACCAAGATAATAGCTGCTAAGCATTACTCAGATGATCATGATGTGATAATAagtaatccacaaaaattttgtttcgaATGTAATGCAGAAGTTGAGGATTACGTTAATCACATCAGGTTTCATACATGccaatttaaatgtaattattGTGGAACTAAATTCTTAACTGAAGAAACATGTCGACAGCATGAGATCTCAAAGCACTCCGTACCTGAAGATCGTCCATTCCATTGCAGTTTTGATTCATGCAATGCATCTTTTAAGACTGAACATCATTTAAAGTCACATATTAATTCAATCCACGATCATAATGAACGACTTTTTCGATGTGAAATATGCAATAGTAAATTTGCATCCAAATCACTGCTTACTGCTCATCTCAGAACACACGATAAAGACAGTGCAATATTTTCTTGTAAGATTTGCGGTAAGTCTTTCAAAAAGCTAGCTACACTTAAGAATCACTCAGTTGCACTGCATCAaacagatgaaatttatgaatgtggACTTGACGAGTGTCAGCTACGATATAAGTTCCTTCAAGATCTCAAAATTCATCGGCAAAACACACACggaatgaatttgaatattcagaAATATTTCCATGAAGGTGATGAATAG
- Protein Sequence
- MSWDEKELDFEDLNTEIDQRCSSDILRVFKNNQGVCLYKLFNDDEFNDVIMIFKLIINREMDVKIISDEYEYKDFDKLTSWNQLNELIEKYLQNDESQMVFEEYDEIIEESNPDIESFDTEEVIETVALVETEEIFEDESMIDEIEAETENPFQCTNCHIIFKNTLGLRHHSQSCNIKKSIVQKCTICDQNFSSNLQLRLHMKSHEDQKGLKCPYCTKTVVNNGSLQRHIKAIHLKQRPHKCSLCGKAFATSTIRNAHERTHNRNSEVQKYLSRDVNGTVCYRCPNCNDIFDTSDHLKNHIEKNCYRPRKKRTYKYPCRYCGKQFVTKIIAAKHYSDDHDVIISNPQKFCFECNAEVEDYVNHIRFHTCQFKCNYCGTKFLTEETCRQHEISKHSVPEDRPFHCSFDSCNASFKTEHHLKSHINSIHDHNERLFRCEICNSKFASKSLLTAHLRTHDKDSAIFSCKICGKSFKKLATLKNHSVALHQTDEIYECGLDECQLRYKFLQDLKIHRQNTHGMNLNIQKYFHEGDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00320954;
- 90% Identity
- -
- 80% Identity
- -