Crip006014.1
Basic Information
- Insect
- Chironomus riparius
- Gene Symbol
- -
- Assembly
- GCA_001014505.1
- Location
- JXPV01006931.1:40428-44768[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 7.5 4.5e+02 1.7 0.1 8 23 115 130 108 130 0.86 2 17 0.00078 0.047 14.2 0.1 3 23 139 160 137 160 0.93 3 17 2.4e-07 1.5e-05 25.3 2.9 1 23 165 187 165 187 0.97 4 17 0.036 2.2 9.0 0.8 2 23 194 215 193 215 0.95 5 17 0.0045 0.27 11.8 0.3 1 23 219 242 219 242 0.89 6 17 0.66 40 5.0 0.3 2 23 249 271 248 271 0.86 7 17 0.0034 0.2 12.2 0.2 1 23 280 303 280 303 0.93 8 17 2.9e-06 0.00018 21.9 1.9 1 23 309 331 309 331 0.98 9 17 0.009 0.54 10.9 0.4 2 21 337 356 336 357 0.93 10 17 0.032 1.9 9.2 0.2 2 23 517 538 516 538 0.96 11 17 0.0083 0.5 11.0 2.4 1 23 572 594 572 594 0.97 12 17 0.04 2.4 8.9 0.6 1 23 600 625 600 625 0.96 13 17 0.00019 0.012 16.2 5.2 1 23 631 654 631 654 0.97 14 17 0.073 4.4 8.0 0.5 1 22 692 713 692 715 0.87 15 17 0.0014 0.084 13.4 0.4 1 23 724 746 724 746 0.94 16 17 0.019 1.1 9.9 3.5 1 23 752 774 752 774 0.97 17 17 0.0002 0.012 16.1 1.1 1 23 779 801 779 801 0.98
Sequence Information
- Coding Sequence
- ATGTCAAAGACAGAAGAAAACTACTTAGAAGTAATCACAATCATCCAGCGAAACAGCAATAATGATGAAGATTATTCCGAAATCATTGAATATGAGCCTCAAAACGACGAAAATGAGATTGTTTATGAATACATTGAGGTCGAAGAAGAGCAAAATGAAGGCGTAAAAGAGCTAATTCAAATCCAAAAGCAAGAAACAGTTGATTATGAGGCAATTTCTCAGCAAGACAATGAAGATGATATGCAGCTATTGGAAATAcacaagaatgaaaatgaatccATCTTGCGAAGTTTAACTGAGGAAAAGTTCAAGTGCATAAATCgaatttgtaagaaaaataacATCAGTTTTGATACTCAGGAAGAACTGAACATTCACAATGAAGAACATATTTTGCAATACAGCAACTCAATATGCCCAATTTGTAACAAAGTACTTGCGAATCAAACGAAACTCTCGAATCATATTGAGTTAAGGCATACACCAAAAAATTATACCTGTGATCAATGCGGAAAGGTGTTTAGAAGTAAAGATAATTTGAGACTTCATATGACTCATCATCGCAAGTACTTCTATGTTGAGTGTAGAGCTTGCAATCGCGGATATAAAAGTATGCAGTCACTGCGATATCATTTGAGACAGCACTTTGAACATCATCAATGTGAAGCTTGTGGAAGagtttttgagcataaaaaacTACTTCTGGGTCACGTAGCTGCAATTCATAATCAAGATCTTCAAGTCCAATGCAGATTTTGTACACGAATGTTTGCTAGAAGTGACGTTAGAGATGCTCACGAACGagaaatacataaaaatgggATGATCGGATCACATTTCCGATGCAATGAGTGCAATGCTGCTTTTGATCTTAGAGATGATTTAATGAGTCACAAAATATTAAGTCACTTCAACGGTGTTATTCATACTTGTGAAGAATGtggaaagaattttaagaaaaagagCTTGTTAGATCTTCACATGAATGTTCATAGAAAGAAGACTATCCAGTGTGAGATTTGTAAGCAAATGTTTACCTTCGTCACGGGTTTGAATAAGCACAAAAACAAGGGAAGATGTAAAGGACCTCCCCTTGAAACTTTAGCTGATAGTATGACAAAGGAAGAAATAGCCAAGATTGCTAAGCaacaattaattgaaatcacTGTGAATCCTAAAAAGGCAAGTGATGAAGATGATATGAGTTTTGgatttgatgatgaagacATCATTACAATTAATAAGGATGCAAGTGTCAAGAAGAAAGCAGGAAGAAAGCCAAAACTATTGGTTTTAAATCAGATGAATAATGAAACTAAGACTGAAATCAAGCAAGAACCAGTAAAagataaaaaggaaaagaaacaATCAATTACTGTAAGAAATATGACACAAGAGGAAATTCAAGAACAACAAGATGAATTAGTTTCTCcacaagaaattattaaaagctcTAGTGGACGAATAATTAAACGTAAACTTCCTCCAGTAATTACATCTACATATTATCGTCCATCGAATGTTCCAAAGCGTCAAAATATCCCATTGACATGCGACATTTGTGGTGATCAATTTGAAAGTAAAGCATCTATAATTGCACATTTAAATCATCATATGAGAATGATCAAGTCTGATAAAGTTTTTGGTGATTTGTTAGAACTTACTGATGAAAAAGATGTGGAATTGACATCGAACAGTTTcaaggaaaagaaatttgcTTGTGATATTTGCGATAAACGTTATCTCACAAAACATCTTTTATCCATTCATAAAAAGTCACATGCAAATCTAAAGGAATTCAAATGTCAAAATGAAAACTGTCTTTTTGAGACAAACTCACcatatgatttaaataatcataTTAAACGAATCCACAATCCTACCAGGCCATTTAAATGTTCAGAATGcgataaaaagtttaaaaggcGTTGCGATATGATTAATCACAAAAAGTCTGTTCATACAAATGTTAGGACTTATGTTAAATGTCCAGTTTGCGAAACAATTATTCTTGAGAAAGGCTTACAAAGTCACATGATAAATCGTCACTCGGAAAAGGCTCAGCAAAAACCTTATGAATGCACAATTTGTGGAAAACGTGAAAGATATGAAAAAGTTCTCCAAAGACATTATTTTGCAGTTCATGAGCCTAAAGATCGAGGCGTTTTATATCAATGCCCAGATTGTCCAGCATCCTTTTATCGACGACGTGACGCGACATCACACTCATTTGTTCATTATGAAGGTGAAATATTCGAGTGCTTTACTTGCAACAATAAATACAAAACTAAGAAAGAATTAAGCAATCATGAATACACTCACAGTCAATCAGAGTTTCCTTGTAATATTTGCAATCAAGTTTTCCAAACCAAATCGGGACGAGgAAAGCATATGAAGAAGCATTCAGAACCTGGAGCAATGCCATTTGTTAGAAAGGAAGAAGGTGACTCTGATAATGACAATGAAGAGGTTATTTATGAGCAATATGAAATGCTCGAAGAAGTAGAACAATACgtaaatgtcatttaa
- Protein Sequence
- MSKTEENYLEVITIIQRNSNNDEDYSEIIEYEPQNDENEIVYEYIEVEEEQNEGVKELIQIQKQETVDYEAISQQDNEDDMQLLEIHKNENESILRSLTEEKFKCINRICKKNNISFDTQEELNIHNEEHILQYSNSICPICNKVLANQTKLSNHIELRHTPKNYTCDQCGKVFRSKDNLRLHMTHHRKYFYVECRACNRGYKSMQSLRYHLRQHFEHHQCEACGRVFEHKKLLLGHVAAIHNQDLQVQCRFCTRMFARSDVRDAHEREIHKNGMIGSHFRCNECNAAFDLRDDLMSHKILSHFNGVIHTCEECGKNFKKKSLLDLHMNVHRKKTIQCEICKQMFTFVTGLNKHKNKGRCKGPPLETLADSMTKEEIAKIAKQQLIEITVNPKKASDEDDMSFGFDDEDIITINKDASVKKKAGRKPKLLVLNQMNNETKTEIKQEPVKDKKEKKQSITVRNMTQEEIQEQQDELVSPQEIIKSSSGRIIKRKLPPVITSTYYRPSNVPKRQNIPLTCDICGDQFESKASIIAHLNHHMRMIKSDKVFGDLLELTDEKDVELTSNSFKEKKFACDICDKRYLTKHLLSIHKKSHANLKEFKCQNENCLFETNSPYDLNNHIKRIHNPTRPFKCSECDKKFKRRCDMINHKKSVHTNVRTYVKCPVCETIILEKGLQSHMINRHSEKAQQKPYECTICGKRERYEKVLQRHYFAVHEPKDRGVLYQCPDCPASFYRRRDATSHSFVHYEGEIFECFTCNNKYKTKKELSNHEYTHSQSEFPCNICNQVFQTKSGRGKHMKKHSEPGAMPFVRKEEGDSDNDNEEVIYEQYEMLEEVEQYVNVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00320908;
- 90% Identity
- -
- 80% Identity
- -