Crip012677.1
Basic Information
- Insect
- Chironomus riparius
- Gene Symbol
- syd-9
- Assembly
- GCA_001014505.1
- Location
- JXPV01001933.1:7991-11047[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.9e-05 0.0017 18.8 0.4 1 23 532 554 532 554 0.96 2 15 0.0042 0.25 11.9 1.7 1 19 559 577 559 579 0.95 3 15 4.2e-05 0.0026 18.2 1.4 3 23 582 603 578 603 0.91 4 15 0.00053 0.032 14.8 0.5 1 23 612 634 612 634 0.97 5 15 4e-05 0.0024 18.3 1.0 1 23 643 665 643 665 0.97 6 15 0.35 21 5.9 2.0 2 20 671 689 670 691 0.87 7 15 2.1e-05 0.0013 19.2 3.3 2 23 692 714 691 714 0.96 8 15 0.00016 0.0095 16.4 0.2 1 23 723 745 723 745 0.94 9 15 0.0026 0.16 12.6 0.8 1 23 751 774 751 774 0.98 10 15 2.8e-06 0.00017 21.9 1.8 1 23 807 829 807 829 0.98 11 15 6.3e-06 0.00038 20.8 1.2 1 23 833 855 833 855 0.97 12 15 1.2e-05 0.00073 19.9 3.7 1 23 861 883 861 883 0.97 13 15 0.26 16 6.3 3.9 2 23 891 912 890 912 0.97 14 15 0.019 1.1 9.9 0.7 2 23 927 949 926 949 0.96 15 15 0.0006 0.036 14.6 3.4 1 23 954 977 954 977 0.95
Sequence Information
- Coding Sequence
- atgccAAAACGCCGACGAACAGCAAGtccacaaaatcaaaatcaattcccAGATCACATTaagatcaaaattgaaaaggattGCGAAGAGGAGGAATCGATTGTCATTCAGAACTTCCAACTAGCATCAAGCTTCGATGaagcaaacaaaataaagaaggaagTTGAAATTAGTTATGAATTGGCTGTTGAGGACAACGAAGAGAGGATACAGCAGGATATTGAGGACGGTACAACATCGGACGATGAGATTGAGTCCAGTTCTGGAAATACAGAAGGTTCAAATCAAAGATCAACTGCAAAATTGACAGAAAATGAAGTTCAAGTCAAGTTGGAGCCTGATGACTATTCAGATAGTCGTGAGCAGCAACATGAACAACAAACTGAGTCATGCCAAGACAAATCTAGCAACTCAGAAGCCATTAAAGAAGAATTCATGATAATCAAGGAGGAAATTGAGGATTTTGGAGttgattttgttaaaattgaagtaaaaatcACCAAAGTTGACATGGCAATCGCTGAGCCTTATGCAAAGAAGTTTAAACTTGATCAGGCAAAGTCCACAAGCAGAAAGTCGACAAGTGGAAGGAAGTCAGTGTCAAAGGTCAGCGAGGAAGCCTCAAAATCTAACAATTCTgttaaaaaagatgaaaaaggaagcaaaaggACGAAAAGTTCAGTAAAAAGtgcctcaaaattcaacaaaactgGTGTTATTGAAGACAATCTAAGTCGAAATGAGTCTGAAGATTCCAATGATTCTGATCAGTTCCACAACGATGAAATATCTGCAACAAATCATGATTCCGACTCAAATTCATCACAACCTGTTCATAAAAGTggaaaatcattgaaaatttcaacaaatttgaagaaaattgattcaaaaaaagatcaaaaaggttcaaaaccaacaaaatcttcaaagcTTGCCAAATCACTGCCACAATCAACctcaaaatcaagaaaaattgacaattcaGATTCCAATTCAAcgaatatcaaaaattctgaTAAATCTGAGTGCAGGAACTCTAAAGTTGTCAACAACCAGCAAAAGGATGgaaaatacttcaaaatatttgatcaatGTAAGCCACAAGGTCAGAAGGACGCTAATTTCACTTCGGATACTCAAAATCTTAAGGAAAAGactaaaaaatcaaacaaaacatCAGAATCTGCATCAAAAAGAACTAAACCTAATAAATCAACTCGAAAATCTCGCAGCTCACTGTCCAAAGCTTCAAAGTCTGAAAATCACAGTACCAAAGTCGATCCTCAGCATTCCAAGTATTCAAACACATCAATCGACAACAACGAAGACTATTCCAACGAGTTATACTCAAGATTGAGCATTGAAGACACCAAAGATCCAAGACTAGCAGCCCTGTTCACCAAAATCTCTGTCAAAAAGGAACAAGGAACagaattaacctcaaaatcatctcaaaatgcagacatcaaaaaattacatgaaatgCACTTAGATGCACTAGGTCTTGGAACTGATATGCCTAATACCTCATCAGCAGATGTCAACTTCCcatcaacatccaaaaatgtCTCAAACTCAACCCCAAAAAAGGAGTTCCAATGCAAACTGTGTCCAAAGTCATTCGACAAAAGAGTCAGCTTAATTAATCATCAAGCAGCTCACACTTCATATGACTATCCGTGCCTTAAATGTGGACTAAAGTTCAAAACAAGTAGAGCTTTTAAGAACCACGAATGTCCAATTTGCCAATATTGTggtaaaaagttcaaaaataagcCAAAGTTGATTAGACATGTGACTTATGTCCACTCAGAAAAGTCAAATTTGGAGCTGTTTACTTGTGACATTTGTGGAAAGGCACTAAAGTATAAAGTGTCAATTTATAGGCACATGACTGAGCATTTGGAAGTGAcgaaaaatttgagatttaaatgtgaaatttgtaataaaagttttatgaagcGCATGGGTCTGCAGAACCATCAGATCCTGCATGTTTTTGCGACACTTTCATGCGACAAATGTGGAATGAAGTTTAAGAAGCAGAAGCCATATGACCAGCATAAATGCTTGACATGCACGCACTGCCCGAagaatttctcatcaaaaacaaaacttaatgaCCACATCCGGAACATGCACACAGATTTGTCAGAATTAAGCCTGTTCATCTGTGATATTTGTGgtaaaagcttcaaatatCGTCCGTCAATTGTCAGGCATGTCCTGGATCATCGTAAGGAAGCCAAATACAAATGTGAAGTTTGTGGGAAGAAATGGAAGTCAGATATCGCATTGAGGGATCATATCCGCATGTGTCATGCTGCTGAGCTTATTACCTGCAAGATTTGCTTAAAGCAAATGAAGCCACAGTGCATTTATCAGCACATGAGGTATGTCCACTCAGAAGTTAGGGATTTCAAGTGTAAAATGTGTGACGCAGCATTTAAAACTAAGGAAAAGCTGAAAAGACATTTGGACACGCACAACAGGAAGTTCAATTGCGATCAATGTGACAGGAAGTTCTCATCACAATACGAACTGACTGAACATCTTAAATGGCATGAAGATccagaaattttcaaatgtagCATCtgcaaaaaatcattttcaactcGAACAAGCTTAACGACACACAGCAAGCTACATAAAGGCATTGTCAGGGATCTCAAATGTCCACATTGTCCATTCATAACTCATCGAAAGGAGAGCATCAAGTATCACTTGACGACTCACGAGAAACGCgacaaaaaattggaaatgaagaaaaattggcTGAAATGTGAGAAATGTGGAGCACTGCTGAAGAACAAGGCATCACTTTGGGGACATCACAGGAAAGTACATCCAACTGAGAGATTTACATGCGATTTTTGTGGAATTGTTGTTAAGACAAAGCACAGTCTGAAGCatcatattgaaaataaacatgCTGGGAATTAA
- Protein Sequence
- MPKRRRTASPQNQNQFPDHIKIKIEKDCEEEESIVIQNFQLASSFDEANKIKKEVEISYELAVEDNEERIQQDIEDGTTSDDEIESSSGNTEGSNQRSTAKLTENEVQVKLEPDDYSDSREQQHEQQTESCQDKSSNSEAIKEEFMIIKEEIEDFGVDFVKIEVKITKVDMAIAEPYAKKFKLDQAKSTSRKSTSGRKSVSKVSEEASKSNNSVKKDEKGSKRTKSSVKSASKFNKTGVIEDNLSRNESEDSNDSDQFHNDEISATNHDSDSNSSQPVHKSGKSLKISTNLKKIDSKKDQKGSKPTKSSKLAKSLPQSTSKSRKIDNSDSNSTNIKNSDKSECRNSKVVNNQQKDGKYFKIFDQCKPQGQKDANFTSDTQNLKEKTKKSNKTSESASKRTKPNKSTRKSRSSLSKASKSENHSTKVDPQHSKYSNTSIDNNEDYSNELYSRLSIEDTKDPRLAALFTKISVKKEQGTELTSKSSQNADIKKLHEMHLDALGLGTDMPNTSSADVNFPSTSKNVSNSTPKKEFQCKLCPKSFDKRVSLINHQAAHTSYDYPCLKCGLKFKTSRAFKNHECPICQYCGKKFKNKPKLIRHVTYVHSEKSNLELFTCDICGKALKYKVSIYRHMTEHLEVTKNLRFKCEICNKSFMKRMGLQNHQILHVFATLSCDKCGMKFKKQKPYDQHKCLTCTHCPKNFSSKTKLNDHIRNMHTDLSELSLFICDICGKSFKYRPSIVRHVLDHRKEAKYKCEVCGKKWKSDIALRDHIRMCHAAELITCKICLKQMKPQCIYQHMRYVHSEVRDFKCKMCDAAFKTKEKLKRHLDTHNRKFNCDQCDRKFSSQYELTEHLKWHEDPEIFKCSICKKSFSTRTSLTTHSKLHKGIVRDLKCPHCPFITHRKESIKYHLTTHEKRDKKLEMKKNWLKCEKCGALLKNKASLWGHHRKVHPTERFTCDFCGIVVKTKHSLKHHIENKHAGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -