Crip005229.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chironomus riparius
Gene Symbol
-
Assembly
GCA_001014505.1
Location
JXPV01001880.1:6703-10270[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.00045 0.027 15.0 0.7 1 23 220 242 220 242 0.98
2 14 1.5e-05 0.00093 19.6 2.3 2 23 249 270 248 270 0.97
3 14 0.00019 0.011 16.2 0.1 3 23 276 297 274 297 0.94
4 14 0.0019 0.12 13.0 0.9 3 23 323 343 322 343 0.96
5 14 0.026 1.5 9.5 1.4 1 23 438 461 438 461 0.98
6 14 0.00021 0.012 16.1 0.5 2 21 471 490 470 491 0.94
7 14 4.3 2.6e+02 2.5 1.3 2 11 501 510 500 523 0.74
8 14 4.2e-08 2.5e-06 27.7 2.6 1 23 532 554 532 554 0.99
9 14 1.3e-07 7.8e-06 26.1 2.4 1 23 561 583 561 583 0.98
10 14 1.9e-06 0.00012 22.4 1.2 3 23 595 615 593 615 0.92
11 14 6.9e-05 0.0041 17.6 2.8 1 23 621 643 621 643 0.99
12 14 1e-06 6.2e-05 23.3 2.2 3 23 651 671 649 671 0.97
13 14 1.1e-07 6.9e-06 26.3 1.3 1 23 677 699 677 699 0.99
14 14 0.0051 0.31 11.7 0.1 1 23 705 729 705 729 0.93

Sequence Information

Coding Sequence
atggAGGAGCATATAAAGAgagattttaatataaatagaaTGTGTAGGTCGTGCCTGACTGAAGCAGGCGATGATATGAGCGAAATATTTGGACATCAGGACTCCCCAGATActttaaatttgcatcaaattttaatgcaattaacAACAAATGTTCAAtttaatCCAAATGATGGAATGCCCGACAAATTGTGCAAAGATTGTACAGAGAAGACGTTTTTAGCTTACAACTTTAAAGTTGTATTAGAGCAAAGTGATACAACACTCAGAAATGTTTTTCGGGATCAAATTCAAACTATAAAGAAAGATACAGTATTTGACCCATCTCACGCATATCTTGGCTTGGGAATCAAGACCGAAATTGCATTTGTTGACGCTGATCCTTTTATCGATGACGATGGTGATTTTGATTATGTTCAAGCTCAACCGCAAAGTTCAGTTCAAGGAAATCAGCAAATGGATAACCACAATGTATACCCACATAATGATGAAGAGATACTAGATtctgatgatgacgatgatgatgatgaagatgacgatgacgatgatgacgaTATTTCCGAGGACATATCACcaaaagaaaaagtcattaaaaagaaaatagtaTCACCAAAAAGTACAGAAACCGTTGACTATATTAAagatgaagaaggaaaattcGTTTGTCAAATTTGCAACAAAAAGCTGGTTGATAAGAAAGGATTCAATTTGCATCTTCGCCTCCACACTGGAGAAAACTTGAAACGTTGCAATATCTGCAATCGAGGTTTCATTAAAAGCGATCACCTCAAAAGACATTTACTGATACACGAGAAATCAGTGAATTGTGACTATTGTGATGAATCATTTGCGTCACGTGCTGACTACAAGATTCATTTGAAAGATGAGCACGAAGATGACATAATACAGGAGTCTGATAAGATACCAAAGAGTCAAAAGCCACGTCCAAATTATATGAATGCAATCTGCAAGATTTGcgataaaaaattccaaaagatAACAGCGTTAAGGACGCATGTAAATCAGCATCTCTTATCGACGTCATTTGATGATACAgacataagaaataaaattttcctttttaatccACTCGAGATTGACTTGGAGAAGTCATCAAATCAAGATCTTCATTTGTATgtgaagaataaattaaatgaaaatgaatgtgaaaagttttatcaaaTTGTTACACGTGATGGCCATGAACTCTTATTAAGTGATTCGGAGAccgaagatgaaaatgaaatgtgtCATCCTGATGATAGAATTGAGTTATCGATTGAGCATGCACcgatttcaacaaaaataccATACACGTGCTCGCGATGCATTAAAACATTTGCAAGGAGTAAAGACTCAATGACCCATATGATGACGGAACATTTACATGAgcttaatgaatttattgatagaTGTAACACATGCAGTAAAGTTTATCCGAATAATTATATGttacaaaaacatttgaaatctCAGTGTGAGAATAAGACAAAGAAATTAAGTTGTAGTACGTgtaataagaaatttatgtgGCTTGATTCGATGGTTAAGCACTGCGAAACTGAGCATCCAGGAacagataaaattaaattgtatacGTGTGAGTTATGTGGAAAGGCATTCTCACGATCGGAGCATCTTGAGAGACATCGAAAGACACACAATCCATCCGAAAAGAAGTTTGAATGCACAGTGTGTCAAAAGAAGTTTAATCGCAAAGACAATTTACGTTCGcatatgaaaattcataagGACAATCGTGACGACGAGGATAAACATTTGTGCATCTATTGTGGTCGAGCATTCAGTAATTCGTCTAATTTAATTGTCCATATGAGACGTCACACTGGTGAGAAGCCATACAAGTGTGATTTATGCGAGAAAGGCTTTCCACGATCATCTGATCTACAATGTCATCGAAGAACGCACACAGGTGAGAAACCCTGCTTATGCACGATTTGCGGTAAAGGATTCTCAAGATCCAACAAACTTGTGAGACATATGAGAATTCACACAGGGATACGTCCTTACCAATGTACCTATTGCGACCGTGCCTTTACGCAGTCCAATGACTTGACACTTCATATACGAAGACATACAGGAGAAAAACCATACgtATGCGGAGTGTGTGGAGACAGATTCATCCAAGGTACAGCACTCAAACAGCACCAAAGAATGCAGGGTCATATGGAAGGAAGCCAACCGAGTCCATACGCAAGTATAAGCGTCAATAATCCAAGTAGATTTACAAACTCTAATTTAGTCAATCGACGTTACATGGAGCAACAGGCGCAACAACAGAGCCAACAAAATTCCCAAATGCCAATCAAGCCAGTGATCCCAAGAAGACGAACAGCAAATAGTCAGCTTTCCACAAATGTTAATCCAGAACAAACTACTTCAACAATGCATAATCAGCCACAAGAGCATGTTGCAAATGACATAAATCGATCACCATCACCTCATACGTCTGGATCACAACATTCGACTGGATCTCAAACACCGAATCCAGCAACGCAAGATATAAAGCCAAATTTACAGAATCTAAATTTGCCACAATATAATGGAAGCATGCCACTTGTAAATAACATACCGAATATGGAGATAGCTACACTGTTTACAATGTCTTTTAATCAGAACTTTcaaaatcactcaaattaa
Protein Sequence
MEEHIKRDFNINRMCRSCLTEAGDDMSEIFGHQDSPDTLNLHQILMQLTTNVQFNPNDGMPDKLCKDCTEKTFLAYNFKVVLEQSDTTLRNVFRDQIQTIKKDTVFDPSHAYLGLGIKTEIAFVDADPFIDDDGDFDYVQAQPQSSVQGNQQMDNHNVYPHNDEEILDSDDDDDDDEDDDDDDDDISEDISPKEKVIKKKIVSPKSTETVDYIKDEEGKFVCQICNKKLVDKKGFNLHLRLHTGENLKRCNICNRGFIKSDHLKRHLLIHEKSVNCDYCDESFASRADYKIHLKDEHEDDIIQESDKIPKSQKPRPNYMNAICKICDKKFQKITALRTHVNQHLLSTSFDDTDIRNKIFLFNPLEIDLEKSSNQDLHLYVKNKLNENECEKFYQIVTRDGHELLLSDSETEDENEMCHPDDRIELSIEHAPISTKIPYTCSRCIKTFARSKDSMTHMMTEHLHELNEFIDRCNTCSKVYPNNYMLQKHLKSQCENKTKKLSCSTCNKKFMWLDSMVKHCETEHPGTDKIKLYTCELCGKAFSRSEHLERHRKTHNPSEKKFECTVCQKKFNRKDNLRSHMKIHKDNRDDEDKHLCIYCGRAFSNSSNLIVHMRRHTGEKPYKCDLCEKGFPRSSDLQCHRRTHTGEKPCLCTICGKGFSRSNKLVRHMRIHTGIRPYQCTYCDRAFTQSNDLTLHIRRHTGEKPYVCGVCGDRFIQGTALKQHQRMQGHMEGSQPSPYASISVNNPSRFTNSNLVNRRYMEQQAQQQSQQNSQMPIKPVIPRRRTANSQLSTNVNPEQTTSTMHNQPQEHVANDINRSPSPHTSGSQHSTGSQTPNPATQDIKPNLQNLNLPQYNGSMPLVNNIPNMEIATLFTMSFNQNFQNHSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00320891;
90% Identity
iTF_00320891;
80% Identity
-