Crip011500.1
Basic Information
- Insect
- Chironomus riparius
- Gene Symbol
- -
- Assembly
- GCA_001014505.1
- Location
- JXPV01025056.1:11979-14874[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 5.4e-05 0.0032 17.9 2.7 1 23 40 62 40 62 0.94 2 24 2.3e-05 0.0014 19.1 0.1 1 23 68 90 68 90 0.96 3 24 0.0024 0.14 12.7 0.5 2 23 98 119 97 119 0.97 4 24 6.1e-05 0.0037 17.7 2.2 1 23 153 176 153 176 0.95 5 24 7.6e-05 0.0046 17.4 0.4 1 23 182 204 182 204 0.96 6 24 0.87 53 4.6 1.3 2 12 212 222 211 231 0.67 7 24 0.00012 0.0075 16.7 1.8 1 23 236 259 236 259 0.97 8 24 0.0019 0.11 13.0 0.9 1 23 265 287 265 287 0.97 9 24 0.00052 0.031 14.8 2.0 2 23 368 390 367 390 0.94 10 24 0.49 29 5.4 0.3 3 23 402 423 400 423 0.92 11 24 0.094 5.6 7.7 4.8 1 23 429 452 429 452 0.94 12 24 6.5e-05 0.0039 17.6 3.6 1 23 457 480 457 480 0.97 13 24 0.015 0.93 10.2 2.2 1 23 486 508 486 509 0.92 14 24 0.00036 0.022 15.3 0.4 2 23 518 540 518 540 0.94 15 24 0.0056 0.34 11.5 1.3 1 23 545 568 545 568 0.96 16 24 6.5e-05 0.0039 17.6 4.4 1 23 574 597 574 597 0.96 17 24 0.0001 0.0062 17.0 1.6 3 23 609 630 607 630 0.95 18 24 0.61 37 5.1 5.8 1 23 641 664 641 664 0.91 19 24 0.03 1.8 9.2 0.8 2 23 673 694 673 694 0.97 20 24 0.00047 0.028 14.9 1.8 1 23 730 752 730 752 0.98 21 24 0.035 2.1 9.0 0.4 1 23 759 781 759 781 0.92 22 24 1.2e-05 0.00075 19.9 1.6 1 23 787 809 787 809 0.97 23 24 0.037 2.2 9.0 2.1 1 14 815 828 815 837 0.78 24 24 0.031 1.9 9.2 2.2 1 23 841 864 841 864 0.89
Sequence Information
- Coding Sequence
- ATGCTGCCAAAAATCATGTGCGAACAGATTGTATGTGATGTTTGTGGAATATTagtagatttaaataaatatgagagACATAAGAAATTTGGACATAAAGAAAAGatcaaaaaggattttttatgCGAGCTGTGCCAAAAAACCTTCACGAgTCTCTACAACTTGCAATATCATATGGCCCATCACATTAATGCTAGATCATTTTTATGTAACGAATGCCCCAGAGCTTACAATACAGCTGCTGATTTAGCTCAACATCAACGCATGCATGACAAAAGAAGAGATCCCTTAAAATGTGAAGAATGTGGAATGCTCTTTCAAATTAGAAGCAAGTTTAATACACATATTCGAATCCACAGAACAGAATCTAAGGAACCAAAAGAATGTCATATCTGCAGGAAAAGCTTCATTTGTTTATCAAGTCACCACCGGATCGTACACATGAATCTTAGAAGCCATGCCTGTAAGTTCTGTGATAAAAAGTTTGGTAAAAAATCAGGTTTGAACAGGCATGTATTGACAGTTCATGAGCaacaaaggaattttaaatgtgagCTTTGTGGGAAAGATTTTGGAGAGAAAGCTCAATTAAAGAAGCATAAAGGAGtccattcattaattaaagaaataacaTATTGTCCAAAATGTaggaagaattttaaaaatattaggCAGCACTATGAAGAAAAGCAcagcaatttaaaatatatttgtcaAAGTTGCTTTAAACGATTTAAAAATCTTCGAGATCttgaaattcatattaaaacaaaacattcaacattTCGTTCATATTTCTGTGATTATTGTAGTAAGGGATTTgctgaaaagtttcaaatagAACGGCATGTAAAgcttcatataaaaattattagttCTAATAAGAATGTCAAAGAAGAATTTGAGTATTTTGGAATAGAAAAGGTTTATGTTGATGAATTGGATcttgaaattaaaactaaaGAAGACATCCGGTTTGATCAATTAGAAGAAAGAGCAAGAAACTTTGTCAATCACGAAAAcatctttaaaaatgatttgatggGATTTGACAGCATGGGAGTTGATTTACGGATACAATaccaaaaagatttttcaataacttgTGATAAAtgtgatgagaaattttctacCAAACATGAAGTCCAGGaacacattcaatttaaacatttaacaGTAAATTCTCAACGAGAACTGATAGCTTGTTTTGGATGtgacaataaatataattcaaaGGTCGAAATGCAAGAACATTTCAACGAAACTCATGACACTTTAAATGGCTTCCATTGTACATTCTGTAACAAAATGTTTGGAAAAGTTAAGctcctcaaaattcatcacCAAGCTAATCACACAAGCATTAAGTTTGAGTGTAAAGActgcaaaagaaattttaattataaatcagCTTTAGATCGACattacaaaagaaaacatttaaatgaaagGAATCATATATGCAATGAATGTCAACGGCAGTTTGGAACAAAGTTTGAGTTGGATCAGCATGTTGAAGGACATCATCGAAATCTGACAATAGAAAATCGGACATGCAACTTTTGtaacaaaacatttataaatgaaaggAATCTAGACATTCATTTGCAAGCCATTCATAGTAATAGCAAGCATGAATGTGAAATttgccaaaaattatttagcTTCAAATCAGCAAAAGATAGACATTTAAATGTTGTgcatttacatcaaaaattacaCGAATGTGAAGATTGTAAAAAAACATTCGGAACCAAATATGACCTTAAGAATCATTTCAATCGCTTTCATAATGAGAACCCATTTGAAATTAAGAGATTTGGTTGCCATCAATGCAATAAGGACTTCGTCACATCCAGTGCACTTTCAAGACATCGTAAAGGTGTTCACGAAAACATTAAACAAAAAGCACCAAAAGATTACAGATGCAAGATTTGTCATGAGCATCTTAATAACAAGtatcaaaaagaaaagcaCTTTACCCAAGTGCAtctaaatggaaataaattgaagagaaCTTGTGGATATTGTAAAATGGATTTTCAACTTTatgagaatttcaaaaatcacattaaCCTTCATGCTGGAATTTTTATATGCATCACTTGTGGTGATCCATTTTCTGCTttagaaatattaaatcagCATGTcgaaagtcacaaaaaaattgaattaagattgaagagatttatttgtgatttatgTGGACATCGACTTTTTAATAAGATACAACTGAATATTCATATGAGAAAACATGTgcagcacaaaaatttttacgtCTGTGAAATCTGCGGACAGAGTTATAAGTTTATTGCACCATTTTTATATCATAAGAAATTACATTCAGGACAAAAGGAATTTATATGTAGCTATTGCAATAAAAGATTTGTTCAAAAGCAGGATTTATTGATCCATACTCGTCAGCATACTAACGAGGAACCTTTTAAATGTCCAATTTGCAGCAAAAGATATTCGCAGAAACATGTTCATTTACAAACACATACAACAACTAGAATCTCTTATGAATGCAATGGGTGTGATCAGACCTTTTTTGATAAACCAAAACTTAAATGTCACGAAGAAAAGGTTCATCCTGAGAAAAAATCAGTTGACTTtattgattataatttttcttgtacCTTAATAAAGTAG
- Protein Sequence
- MLPKIMCEQIVCDVCGILVDLNKYERHKKFGHKEKIKKDFLCELCQKTFTSLYNLQYHMAHHINARSFLCNECPRAYNTAADLAQHQRMHDKRRDPLKCEECGMLFQIRSKFNTHIRIHRTESKEPKECHICRKSFICLSSHHRIVHMNLRSHACKFCDKKFGKKSGLNRHVLTVHEQQRNFKCELCGKDFGEKAQLKKHKGVHSLIKEITYCPKCRKNFKNIRQHYEEKHSNLKYICQSCFKRFKNLRDLEIHIKTKHSTFRSYFCDYCSKGFAEKFQIERHVKLHIKIISSNKNVKEEFEYFGIEKVYVDELDLEIKTKEDIRFDQLEERARNFVNHENIFKNDLMGFDSMGVDLRIQYQKDFSITCDKCDEKFSTKHEVQEHIQFKHLTVNSQRELIACFGCDNKYNSKVEMQEHFNETHDTLNGFHCTFCNKMFGKVKLLKIHHQANHTSIKFECKDCKRNFNYKSALDRHYKRKHLNERNHICNECQRQFGTKFELDQHVEGHHRNLTIENRTCNFCNKTFINERNLDIHLQAIHSNSKHECEICQKLFSFKSAKDRHLNVVHLHQKLHECEDCKKTFGTKYDLKNHFNRFHNENPFEIKRFGCHQCNKDFVTSSALSRHRKGVHENIKQKAPKDYRCKICHEHLNNKYQKEKHFTQVHLNGNKLKRTCGYCKMDFQLYENFKNHINLHAGIFICITCGDPFSALEILNQHVESHKKIELRLKRFICDLCGHRLFNKIQLNIHMRKHVQHKNFYVCEICGQSYKFIAPFLYHKKLHSGQKEFICSYCNKRFVQKQDLLIHTRQHTNEEPFKCPICSKRYSQKHVHLQTHTTTRISYECNGCDQTFFDKPKLKCHEEKVHPEKKSVDFIDYNFSCTLIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -