Basic Information

Insect: Chironomus riparius
Gene Symbol: -
Assembly: GCA_001014505.1
Location: JXPV01022935.1:1-4210[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 4.5 2.7e+02 2.4 0.1 3 23 5 25 4 25 0.86

2 25 0.00013 0.008 16.7 7.5 1 23 40 62 40 62 0.96

3 25 8.7e-06 0.00053 20.4 0.1 1 23 68 90 68 90 0.97

4 25 0.00052 0.031 14.8 1.1 1 23 132 155 132 155 0.96

5 25 8.1e-07 4.9e-05 23.6 1.1 1 23 161 183 161 183 0.98

6 25 0.0085 0.51 11.0 1.8 1 23 215 238 215 238 0.96

7 25 0.0005 0.03 14.9 1.2 3 23 246 266 245 266 0.98

8 25 0.0013 0.08 13.5 0.4 3 23 307 327 305 327 0.97

9 25 0.00025 0.015 15.8 2.8 1 23 358 381 358 381 0.96

10 25 0.0011 0.064 13.8 1.3 1 23 384 407 384 407 0.94

11 25 0.0038 0.23 12.1 3.4 1 23 523 546 523 546 0.96

12 25 0.0015 0.088 13.4 0.6 1 23 554 577 554 577 0.97

13 25 0.0039 0.24 12.0 0.3 2 23 596 618 595 618 0.96

14 25 0.0031 0.19 12.4 1.7 2 23 624 646 623 646 0.95

15 25 0.0012 0.071 13.7 3.8 1 23 652 675 652 675 0.96

16 25 0.045 2.7 8.7 1.1 5 23 689 708 688 708 0.96

17 25 0.0054 0.32 11.6 0.2 2 23 718 740 718 740 0.94

18 25 0.1 6.2 7.6 0.5 3 23 750 770 749 770 0.96

19 25 0.0015 0.092 13.3 0.2 1 23 774 796 774 796 0.92

20 25 0.0044 0.27 11.9 1.6 3 23 808 828 806 828 0.95

21 25 0.0001 0.006 17.0 2.6 1 23 835 857 835 857 0.97

22 25 3.3e-07 2e-05 24.9 0.6 1 23 862 884 862 884 0.98

23 25 0.00034 0.021 15.4 3.6 1 23 890 912 890 912 0.98

24 25 0.00045 0.027 15.0 1.8 2 23 920 942 919 942 0.94

25 25 1.4 87 4.0 10.0 1 23 948 971 948 971 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	4.5	2.7e+02	2.4	0.1	3	23	5	25	4	25	0.86
2	25	0.00013	0.008	16.7	7.5	1	23	40	62	40	62	0.96
3	25	8.7e-06	0.00053	20.4	0.1	1	23	68	90	68	90	0.97
4	25	0.00052	0.031	14.8	1.1	1	23	132	155	132	155	0.96
5	25	8.1e-07	4.9e-05	23.6	1.1	1	23	161	183	161	183	0.98
6	25	0.0085	0.51	11.0	1.8	1	23	215	238	215	238	0.96
7	25	0.0005	0.03	14.9	1.2	3	23	246	266	245	266	0.98
8	25	0.0013	0.08	13.5	0.4	3	23	307	327	305	327	0.97
9	25	0.00025	0.015	15.8	2.8	1	23	358	381	358	381	0.96
10	25	0.0011	0.064	13.8	1.3	1	23	384	407	384	407	0.94
11	25	0.0038	0.23	12.1	3.4	1	23	523	546	523	546	0.96
12	25	0.0015	0.088	13.4	0.6	1	23	554	577	554	577	0.97
13	25	0.0039	0.24	12.0	0.3	2	23	596	618	595	618	0.96
14	25	0.0031	0.19	12.4	1.7	2	23	624	646	623	646	0.95
15	25	0.0012	0.071	13.7	3.8	1	23	652	675	652	675	0.96
16	25	0.045	2.7	8.7	1.1	5	23	689	708	688	708	0.96
17	25	0.0054	0.32	11.6	0.2	2	23	718	740	718	740	0.94
18	25	0.1	6.2	7.6	0.5	3	23	750	770	749	770	0.96
19	25	0.0015	0.092	13.3	0.2	1	23	774	796	774	796	0.92
20	25	0.0044	0.27	11.9	1.6	3	23	808	828	806	828	0.95
21	25	0.0001	0.006	17.0	2.6	1	23	835	857	835	857	0.97
22	25	3.3e-07	2e-05	24.9	0.6	1	23	862	884	862	884	0.98
23	25	0.00034	0.021	15.4	3.6	1	23	890	912	890	912	0.98
24	25	0.00045	0.027	15.0	1.8	2	23	920	942	919	942	0.94
25	25	1.4	87	4.0	10.0	1	23	948	971	948	971	0.94

Sequence Information

Coding Sequence: GGTCAAGTAATTTGCGAAACTTGTGGAGTTTTAGTAGATATAAGCAATTATGAGAAACATCTTAAGTATGGACATAACTTAGAAAACTCTGTGTCTCAATCAGAATCTAATAAGAATCATAAATGCCATATGTGCAGCAAAACCTTTACAAGTGCATACAATTTAAAGTATCATATAGCTCATCACATAAATGCCAGATCTTTTGCTTGTACCGAATGTCCAAAAGCTTATAATACAGCATCAGATTTAGCACAACATAAGAGAATTCATAGCAACATAGTTAAGGTGCCTCGTAAGGCTAAAAAATTGGAGCCTCAAACATGTCCAGTTTGCTCAAAAACAGTTTTGCGTTTGACAATGCACATTCAGCTCGTTCATAAGAATCAGCGGAACTACAATTGTgaattttgtcataaaaagttTGGTAAAAAAGCAGGATTAGACAGACATATTCTAGtagttcataaaaatataaagaactTCAAATGTGATCAATGTGGAAAGACTTTTGGTGAAAAATCACTGCTTAGAAGACATCAAAGTGTACACAGTTCCGTTAAAACATCATTTTATTGCAATGTTTGTAAAAAGTATGTTGgagatattaaaaatcattgtaCCACTGAGCATGCTGATGTACCATTCGAATGCGAGTACTGCTTTCGACGGTATGCAAAGCAAAGAGAATATAGAGTTCACGTGTCTTCAAAGCATACAAAGTTAAGGAAATGGTTGTGTGATTTATGTGGTAATAAATTTGCTGAAAAGTATCAATTAAGAAGACATTTCCGGTCTCATTTTAATGCCAATGGTGGTACAGAAGCTAACTTTTCGCAATTAAATGATTTGCTCAAAACGGAAGCAAGATCACCTTCCAAAAAGTCATCAGCAAAAAAGtctaacattaaaaattttggatgtaaattatgtccaaaaaagtttaaagcaaGGCCGCTGCTTAGAGCTCATCTCGAAAGACATCAGcataagaaggaaaattattgtaatattTGCAagatttatgatgataatattaAAGAACACTACGAAGCTGAACATAATGATCTTGAATTCACATGTGAGAtatgctttaaaaagtttggaagGAACACACAGTTAAGAAATCATAAATCCTCAAATCATGTCGATCATTTTTGTGATATATgcggaaaaatattttgtaatctTATAGCTATTAAGTCACACATGGATATGGTTCATTTCAAACCTGTGACAATAGAAGAGTCAGATGATAATGATTACAATGACAGTATTTCTGATCAAGGAAATGACTTTGATGATgcaagtgatttttttgagcGCGAGACAAAAGCAGATATTGAAATTGTGAATGTTAACTCAATTGATATCAAAAAGGAACCGGTTGATTTATATGACGAGATTATCCACGAAACAGAATTACAAATTAAGGACGAACCACTGTCAGACTTAGAGGAGCTTGATACTTTTGATAGTGAAATCGCGGACAACATTAAGGAAGAAATAACAATAGAACAAGAGAAAATACAAGAGCCCGAAGTTGTTGAGGATGTGGACGATCAAGAATTCAAATGTAATGtctgtaaaaaattatatccaaCAAAAGACACATTTAGACAGCATTTTATGTCTAaacatgttaaaaataaaaataattcgtTCATATGCAAAGCATGCGATAAAACATACAAAAGTAAAGAGTTAATTTTCATACACGTGAGAAGGATTCatagaaagttgaaaaatgaacCTTTTAAGGAACAATCAAGTGAACAGTCTAAATCAATGTGTAGTATCTGCGGAAAAATCTTgagcaatgaaaaaattttaaaaacccaTATTAAGACAATCCATAACGAAAAACAAATTCCATGCACAGTTTGCGGTaaaaaattcagcttaatATCGTTAATGCATAGGCACAGaAGTAGGACTCATGAAGGTGTACGCAAACATAAATGCGACAATTGTCCTCAAAAGTTTGCAACTAATTATGAGCTTGAACTTCATACTAAACATAATCACAATCTTGACCGAGAAAATACTTTTTCTGGATTTATGTGCTATTGTGGAGTTTCGTTTCCAAGGCAGTGTGTTCTATCGCGTCACAAGAGATCTGTTCACGGTGATAAAGATCCAGATATTATTCGAGAATGTGAGATTTGCAAGGAAGTTTTTGCCAATTTAACTCTAAAACGAAAGCATATGGCACAAGTTCATTTAAATGgcaagaatttaaaaagaagcTGTGGATTTTGTAAACAAGAATTTGATCTTTACAAAGAGTTTAAGGCTCACATTGAGTCACATGTTGGATTATTCATTTGTATTACTTGTGGAGAGTTCTTTATTGACGCTGAATCCTTAAAATCTCATCAGACCACTCACAGAAGTGTCGATTTTAATCttagaaaaatcatttgtgATTATTGCGGACATCGCACATTCTCAAAACGTTCACTTTTATTGCACATGATCAAGCATGTTAAAGACTCTAAAACACATTATTGTGATATCTGTGGGAAAGAATTCAAACTTGCGTCGTCACTATACACTCATCGTAAATATCATGCAGAAGGAGAATTTCCATGCACGCATTGTGATCGAAAATTTGCGACGAATGCTGAACTTGTTGCGCACATTCGAACACATACAAATGAAAAACCATTCAGGTGTCAAATTTGCGACCGGAGATTCAGACTAAAGATTTTACTAAAGTCTCACCATGAAACTCATCCAGAGACAAGAGTCatgaataaatgcaaaaaatgcaATCATGTATTTGCCGATAAGAAACAATTGAATATACATGAAGAATCAGTTCATCTTGAATTACGTCCATTTCGTTGCTACATTTGCTGCATGTCTTTTAGAtataaacataatttaataagGCACAATAAGCATAAGCATCTCTAG
Protein Sequence: GQVICETCGVLVDISNYEKHLKYGHNLENSVSQSESNKNHKCHMCSKTFTSAYNLKYHIAHHINARSFACTECPKAYNTASDLAQHKRIHSNIVKVPRKAKKLEPQTCPVCSKTVLRLTMHIQLVHKNQRNYNCEFCHKKFGKKAGLDRHILVVHKNIKNFKCDQCGKTFGEKSLLRRHQSVHSSVKTSFYCNVCKKYVGDIKNHCTTEHADVPFECEYCFRRYAKQREYRVHVSSKHTKLRKWLCDLCGNKFAEKYQLRRHFRSHFNANGGTEANFSQLNDLLKTEARSPSKKSSAKKSNIKNFGCKLCPKKFKARPLLRAHLERHQHKKENYCNICKIYDDNIKEHYEAEHNDLEFTCEICFKKFGRNTQLRNHKSSNHVDHFCDICGKIFCNLIAIKSHMDMVHFKPVTIEESDDNDYNDSISDQGNDFDDASDFFERETKADIEIVNVNSIDIKKEPVDLYDEIIHETELQIKDEPLSDLEELDTFDSEIADNIKEEITIEQEKIQEPEVVEDVDDQEFKCNVCKKLYPTKDTFRQHFMSKHVKNKNNSFICKACDKTYKSKELIFIHVRRIHRKLKNEPFKEQSSEQSKSMCSICGKILSNEKILKTHIKTIHNEKQIPCTVCGKKFSLISLMHRHRSRTHEGVRKHKCDNCPQKFATNYELELHTKHNHNLDRENTFSGFMCYCGVSFPRQCVLSRHKRSVHGDKDPDIIRECEICKEVFANLTLKRKHMAQVHLNGKNLKRSCGFCKQEFDLYKEFKAHIESHVGLFICITCGEFFIDAESLKSHQTTHRSVDFNLRKIICDYCGHRTFSKRSLLLHMIKHVKDSKTHYCDICGKEFKLASSLYTHRKYHAEGEFPCTHCDRKFATNAELVAHIRTHTNEKPFRCQICDRRFRLKILLKSHHETHPETRVMNKCKKCNHVFADKKQLNIHEESVHLELRPFRCYICCMSFRYKHNLIRHNKHKHL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -