Crip011504.1
Basic Information
- Insect
- Chironomus riparius
- Gene Symbol
- -
- Assembly
- GCA_001014505.1
- Location
- JXPV01025056.1:15032-17742[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 2.2e-05 0.0014 19.1 2.2 2 23 34 55 33 55 0.96 2 21 4.2e-07 2.6e-05 24.5 0.2 1 23 61 83 61 83 0.98 3 21 0.0044 0.27 11.9 0.3 2 23 91 112 90 112 0.97 4 21 0.086 5.2 7.8 0.3 2 14 129 141 128 148 0.82 5 21 0.0001 0.006 17.0 0.5 1 23 154 177 154 177 0.97 6 21 7.9e-06 0.00047 20.5 0.7 1 23 183 205 183 205 0.98 7 21 0.00041 0.025 15.1 3.3 1 23 233 256 233 256 0.97 8 21 4.2e-05 0.0025 18.2 1.0 1 23 262 284 262 284 0.98 9 21 0.0017 0.1 13.2 1.5 1 23 423 446 423 446 0.96 10 21 9.2e-06 0.00056 20.3 2.8 1 23 451 474 451 474 0.98 11 21 0.00064 0.038 14.5 2.8 1 23 480 503 480 503 0.94 12 21 9.2e-06 0.00056 20.3 0.4 1 23 513 536 513 536 0.95 13 21 0.26 16 6.3 0.6 2 19 548 565 548 570 0.80 14 21 0.017 1 10.0 0.1 3 23 580 600 579 600 0.97 15 21 0.0035 0.21 12.2 2.5 1 23 604 626 604 626 0.96 16 21 0.039 2.3 8.9 1.2 1 23 636 658 636 658 0.98 17 21 0.00021 0.012 16.1 3.2 1 23 665 687 665 687 0.96 18 21 3e-08 1.8e-06 28.2 0.6 1 23 692 714 692 714 0.97 19 21 0.0022 0.13 12.8 1.9 1 23 720 742 720 742 0.98 20 21 0.00019 0.011 16.2 0.8 1 23 748 771 748 771 0.92 21 21 0.04 2.4 8.8 7.6 1 23 777 800 777 800 0.89
Sequence Information
- Coding Sequence
- ATGAATGGACAAGTAATTTGTGAAGTTTGTGGCATATTAATAGATAGAAACAAATATGAGAGACATAGAAAATATGGACACAAGGAAAATAAGGATAACAAATGCGATTTGTGCAATAAAACCTTTACAAGTGCTTACAATTTACAGTATCATTTAGCACATCATGTTAATGCCAGATTGTTTATATGCAACGAATGTCCAAAAGCATACAATACAGCTTCAGATCTAGCACAACATCAAAGAACTCATGATAAGGGAAGAGATCCGCTCAAGTGTGATGAATGTGGGATGTTATTTGAAGCTAGGAGTAAATATAATAGTCACTTGAAGATTCATAAGCCAGTAGTTAAACAGCCTTATGTACCACGAAAAGGCGAACCAAAAGAGTGTCCAATATGCGAAAAGAGCTTTATTTCTCTATCGAAGCACAACAAAATCGTACACATGAATCAGCGGAACTACGATTGTGAATTCTGTGATAAGAAGTTTGGGAAGAAATCAGGTCTGGATAGGCATGTACTGACGGTAcataaaaagcaaaagaattttaaatgtgagCAATGTGATAAAGCTTTTGGAGAAAAGGCTCAATTGAAAAAACATGAACGTCTTCATTTATTCACATATTGTGCTAAATGTAAAGGTCATTTTGAAGACATAAAACAACATAATGAGGAAAAGCATAGTAATCTCAAGCATTCTTGTAACAGTTGCTTTAGAGTTTTTGAAAGATTACGTGACCTGGAAAGTCATATGAAAACCAAGCATTCATCAATCCGCTCATATTTCTGTGATTACTGTAATAAAGGATTTGCAGAGAAATTCCAAATTGAACGGCATATGAAAGTACACAAGAGACAATTTATGAGAGAAGCAAGTATCAAACAGGATGTAGAATTTAGTtcgaatgaaataaatgatagATTTAGCCCAGAATTAGAAGTTGAGGAAGAAAACTATATCGAAGTTAAACAGGAGCAAGCTTTACACCAATCAACAACTTCAGAACTAAAAATTAAGCTAGAAGTACTGGATATTAACTATGATTATGAATCTATGAACCCATTTTTATCTGatgaaatagaatttaaaaaggaaacaTGTATTTCATTCGATTTTgtccaaaattattcatgtgaTCAAAGTGATGATACAACTGTAAGATACACTGACAATAAAAGCAGTAATCGCAATCAAAAACCTAATAAGGAACAAAGAGTAAAGAATGCTCCTAAAAATCTATTAAGAAACAAGCAAGGAATCAAGTTTACCTGTGATATATGCGGTAGTCAGTTTGCTCATAAATTCACTGCTCGAAAGCACATGGATTCAATTCACAAGAAGATTAAGTATGAATGTGAAATATGTCACAAGACATTTACTTTTAAGAACACACTGTACACGCACATAAAAGTCGTCCATCAACAGAAACGATCCCATGAATGTCAGTTTTGTAAGAAAAAGTTTGGAGTCAAGTATTCTTTAACTAAGCATATCGAAAATGTTCACTCAGAGAATCCAAGTGAACGAAAAAGATATGAATGTGATTTATGTGATAAAACCTTTACTTCAAACAGCGGTctttatattcacaaaaaaggtGTTCACGAGAAAGTCAAACAATATAAAAGAGCTGAACGTCAATGCAAAATATGTTATGAACCATTTAAAACAAAAGGCCATGACTTAGTGCATACAATTCAAGTTCATATGAATGGAAAGAAGCTAAAAAGAATTTGTGGATACTGTAAACAAGAGTTTGATCTTTACGAGGATTTCAAGGCACACATTGAGTCACATGTTGGATATTTTATCTGCATGATctgtgataaattttattatgatgaaCACTCTCTTAAGTCCCACAAAGATTCGCATAAAAAAGTAGACATAAAATACAGAAATTACGTCTGTGATCATTGTGGTGAACGGTTGTTAACAAAACTACTGATGAAGGTCCATTTAAGGAAGCATACTAAAAACTATAACCTTCACTACTGTGATTATTGTGGCAAAGGATTCAAGTTTGAATCATCGCTTTATACTCATCGCATTTATCATCAAGAAGGAAGATTTGCATGCACTTATTGTGGAAAGAAATTCGCCAGAAATTCTGATCTTATTCAGCACATTCGCAGTCACACAAATGAGAAACCATTTAAATGTGAAATTTGCAGTCGAGGATTTGCATCCAAAACCTTGTTGAAATTTCACAAACAAACTCATCCTGAAACAAATGCATTCAAATGTCGGGAATGTCATCAAGTATTTGTGAATAAAGTACAGTTAGCaaatcatgaaattcaaattcatcctGAAATACGCCCGCATTTTTGCTACATTTGCGACTTATCCTTTAAATACGAACATAATTTAAAGAAGCATAATTTACACAAGCATTCATAA
- Protein Sequence
- MNGQVICEVCGILIDRNKYERHRKYGHKENKDNKCDLCNKTFTSAYNLQYHLAHHVNARLFICNECPKAYNTASDLAQHQRTHDKGRDPLKCDECGMLFEARSKYNSHLKIHKPVVKQPYVPRKGEPKECPICEKSFISLSKHNKIVHMNQRNYDCEFCDKKFGKKSGLDRHVLTVHKKQKNFKCEQCDKAFGEKAQLKKHERLHLFTYCAKCKGHFEDIKQHNEEKHSNLKHSCNSCFRVFERLRDLESHMKTKHSSIRSYFCDYCNKGFAEKFQIERHMKVHKRQFMREASIKQDVEFSSNEINDRFSPELEVEEENYIEVKQEQALHQSTTSELKIKLEVLDINYDYESMNPFLSDEIEFKKETCISFDFVQNYSCDQSDDTTVRYTDNKSSNRNQKPNKEQRVKNAPKNLLRNKQGIKFTCDICGSQFAHKFTARKHMDSIHKKIKYECEICHKTFTFKNTLYTHIKVVHQQKRSHECQFCKKKFGVKYSLTKHIENVHSENPSERKRYECDLCDKTFTSNSGLYIHKKGVHEKVKQYKRAERQCKICYEPFKTKGHDLVHTIQVHMNGKKLKRICGYCKQEFDLYEDFKAHIESHVGYFICMICDKFYYDEHSLKSHKDSHKKVDIKYRNYVCDHCGERLLTKLLMKVHLRKHTKNYNLHYCDYCGKGFKFESSLYTHRIYHQEGRFACTYCGKKFARNSDLIQHIRSHTNEKPFKCEICSRGFASKTLLKFHKQTHPETNAFKCRECHQVFVNKVQLANHEIQIHPEIRPHFCYICDLSFKYEHNLKKHNLHKHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -