Crip011448.1
Basic Information
- Insect
- Chironomus riparius
- Gene Symbol
- lola
- Assembly
- GCA_001014505.1
- Location
- JXPV01013538.1:619-3771[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.3e-11 1.4e-07 31.1 0.1 5 40 345 380 343 383 0.86
Sequence Information
- Coding Sequence
- atgcagcaatttcaaattaaatggaataatCATCTGAATATATTTTCTTCAGCTCTATCGAAGtattttcacgataagaaatttttggatgttattCTGGTGGTCGAAAATGGAAATCATATGATTCAATGCcataaaatagtcCTTGATGCTTGTTCACAATACTTTTCAAACATATTCAAGAGCAAAttattagaagaaaaaaacatcgTAATTTGTTTACCAAAGGAAATCGAGCTATGGGAAATTCAAGCAGTTTTAAATTATATGTATAATGGAGAGGTTTGTATTTCACAAGACGGTCTGAAGAGCCTTGTGAAATGTGCTGAAATTTTACAAGTCAAAGGACTCTGTGGCGTTGACTCTATATCTGAAAggaaaatcaattcaaatgaTATTTCAGATGATGCAATTATAAAACATGAAATCAGCATAGacGAAGAAgaaactgaaatttttgagaCTGATTGTGTGCAATCAATAGTAAAAGAAAAAGataTCTCACAAGAAAGGACGACAGATCATGCTGTAACTTCTCACCTTAAAAACAACGAgactgaaaattttcttagaGTGAAAAAGAACTTGTTTAACAAAGAAGAATCGATTTTAGAACGAGTCAACGTACCAAATAATAATGGCAACAATCTGCCATCTTCCAATAATCGAGATCAATATGATGCATTTGAGAATATTATATGCTCACCATCAATATTTATGGAAAACGATAAAGAATCTATTGATACCAAAACTGCAATTAAATTCCAAAGTAGTAAAAACGTAACGAATCCAAATGAAGATGAAGACCAAAATATGATGTACACAAATGATGTTTTATACGATCTTATCAGTAAGAAAATGACTGGCGGTAATTTAGCAACTGACACGGATGGCGATTGCAATTTGATGATATCTTCTGTAAACTCATTAAACGACGATGCAAATACAGATTCAGATGCAAAGAAATCGATAGCCGGACTTTATTTGCGAAATCCTAGAGgaaatcaaaTTCGTCAATATGATGTTAATGCTTTGTATTCTGCTCTTGAGGACGTTCGAAATGGAGTTAGCATATATAGGGCTGCCCAAACATATAGCATTCCGCGCAAAACTCTCAGGAACTGGATGAAACGTTTGCACATTAAATCTCACTTCCCGATGCCCAAACAACTCGCCAAAGCCgctgaaaagaagaaaagccTACAGAACAGCATTTTGATAGATGGAATGGACGGTGATAATCCCTTTAAAACCGAAGAAGTTGAATTCAAAAccaacataaatttttga
- Protein Sequence
- MQQFQIKWNNHLNIFSSALSKYFHDKKFLDVILVVENGNHMIQCHKIVLDACSQYFSNIFKSKLLEEKNIVICLPKEIELWEIQAVLNYMYNGEVCISQDGLKSLVKCAEILQVKGLCGVDSISERKINSNDISDDAIIKHEISIDEEETEIFETDCVQSIVKEKDISQERTTDHAVTSHLKNNETENFLRVKKNLFNKEESILERVNVPNNNGNNLPSSNNRDQYDAFENIICSPSIFMENDKESIDTKTAIKFQSSKNVTNPNEDEDQNMMYTNDVLYDLISKKMTGGNLATDTDGDCNLMISSVNSLNDDANTDSDAKKSIAGLYLRNPRGNQIRQYDVNALYSALEDVRNGVSIYRAAQTYSIPRKTLRNWMKRLHIKSHFPMPKQLAKAAEKKKSLQNSILIDGMDGDNPFKTEEVEFKTNINF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00319803;
- 90% Identity
- iTF_00319803;
- 80% Identity
- iTF_00319803;