Crip012055.1
Basic Information
- Insect
- Chironomus riparius
- Gene Symbol
- bab1
- Assembly
- GCA_001014505.1
- Location
- JXPV01004559.1:5040-11211[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.8 7.6e+03 -3.2 0.0 30 39 266 275 265 277 0.83 2 3 1.7e-12 4.7e-09 35.9 0.0 3 43 488 528 486 530 0.90 3 3 0.66 1.8e+03 -1.2 0.3 4 20 625 640 624 640 0.85
Sequence Information
- Coding Sequence
- ATGGGTAGTGGAAATGAGACAAAGAATGGTGCCACAAAGAGTGGCACTGGAGTGTGGTCATCAGATGGACATGGCTATTGCCTTAGATGGAATAATCACAAATCGAATCTCGTTGAAATACTTGAAGCACTTATCAAAATGGAATGTTATGTTGATTGCACAATATATGTTGATGATCGTGTGCAGTTTAAAGCACATCGTGTTGTATTAGCCGCATGCTCACCATACTTTCAAGCAATTTTACAGGATGCTCCACAAGATCATTGTAGTTTAATTTTCCCAGGTGTTAAGGAATTCGAAATGAGAACACTTTTAGAGTACATTTATGTTGGCGAAGTTAACATCGCTGAATCACAGTTACACAGAATaatcaaaattgcaaaaatgcTTGAAGTCAAAGGACTTCTTGACATGGTTGATCTCACAAATAATATAagtcaacagcaacaacagcagccAATACCAAGTCCACAGAATAATAGCAATCTCTTTAGAAGTGAACGTGAACCAAATCCATTATCAGATCATAAACGTGATCAAATAGCATATCCACTTCATCCACTAACACATTCATCGCCAATCATTTCAACGTCAACAAAGATCTCATCAGCACAGAGCTCATCATCACCACCGTACAATTATAAATCACCATATGCAGCAAGTATTTTCTCACAAAGCTCGAGTGGATCACGCGAAATAATTGGAGCTGGCATACCAAAGCAACAAGACATTATGGATGACgaaagaaatagaaattgGCCATCACCTTTACCTTTATCCCTTTCACGATCTGCTCAATCAACGCTCAGCTCTGTCTATGAAACTGGTTCCGATATGAATCCATTAAAAcgtaaaaaattatcatcaattagTTCAATGCTCATGACTCGAGATACTCCAATCTTACGTAATGTTCTTGCTCAATCCATTGCTGCCGATTCATCAAATAATGCACTTCAAATGATTGCAAATGCATCAAGTCCAACACGTGCTAGTAATAATGGCGATGGTGAAGATGGCAATGGAAATGGAACTGATAACATGGATCACAATGACACAAATAATAACGAAAATAATGgcaatggaaataatttagATGATTCTAATGTTGGAAATGTAAGTGGCGGAAACGGATCAGTTTATGTGAGTTATGGCAGAAAAAGTGGTGCACGTAGTTATCACTCATCGAATGGAAGCGACAATTCCGAAAAGaaatttaaatatgaagaacCGGCATCACCTTTCACTGACAAATCATTTGATGACGAATCAAATAGTGATCGACGCCCACGTGAATCACCACCAGAATTTTTAGGCGATATTAGACTTCCATCTTATctacagcaacaacagcagttCCAACAAGCACAATATCAACATCACAGTCAAGGTAGTGGAGGTAATGGTAGTGCTTCTGGTTCACAAAAACCGGAATGGAAGCGCTACAAACAATATACCAGAAATGATATTATGTCAGCTATTGAATGTGTTCGCAATGGAATGAGTGCGCTTCAGGCAAGTCGCAAATTCGGTGTGCCATCGCGTACATTATATGATAAGGTGAAAAAGTTGGGCATTACAACAGGAACACCACGCAATAGATCTACATCTAAACGAGAACCAGGTCCAAGTTCAAGCAGTGCTGCATTCCCATATGGTTCATTAAGCGGAGCTGCTGGAGCATTTGGCTTATATCCAAACCAAGACAATCAATTATCAACATCACAAGACTTTGATTCAGAAATGGAAGTTGAAAACATGAAACATCACCGACCAAGTCCACATGCAAGCCTTCTTGATCCAATTTTCTTACAGAAATTAGCAGCAGAAGCTCGTAGCGAAGATTTTAGAGGTGATGCTTTACATGCAATGGCTCTTGCAGCAGCAGCACATGCTCAATTCAATGGAATGGGAACAAGTTCACGTGGACATGATCCAACCACAGCCAGtgtattatcaaaatttattaatcgtCATGATAATGATGAACGAGAAGAACGAGAACGGGATAGAGATCGCGAACAAGATAGAGAGAGGGAGCGTGAAAGGGAGAGAGATAGAGAGCGATATGAAAGAGAACGAGAACGTGAAAGGAATCGATCGAATGGTGaacaatcattaattaaacgTGAACCTGCAGAAGAGATTGATGATGAGATGGAAGAGATTGATAGAGCAGAAAATTTGTCAGTTTTAAGACGTGAATCTCCACCACACATGACTCCACCGATTCCACATACACCGCCATTTGAGAATCGCGGTGTTATTGTGCCACCAATGAAGTATTTATCACCTAGATCCGAACCTTCATCGACCACACCACCAAATGTTATGGATCAGCCATTAGCACTCGACACGAATGAATTAAAGCAGAAATTTGCTGAAACTGGTGTTGCATTGACTCCAACAACCACAGCAAATTATGATGAGTAG
- Protein Sequence
- MGSGNETKNGATKSGTGVWSSDGHGYCLRWNNHKSNLVEILEALIKMECYVDCTIYVDDRVQFKAHRVVLAACSPYFQAILQDAPQDHCSLIFPGVKEFEMRTLLEYIYVGEVNIAESQLHRIIKIAKMLEVKGLLDMVDLTNNISQQQQQQPIPSPQNNSNLFRSEREPNPLSDHKRDQIAYPLHPLTHSSPIISTSTKISSAQSSSSPPYNYKSPYAASIFSQSSSGSREIIGAGIPKQQDIMDDERNRNWPSPLPLSLSRSAQSTLSSVYETGSDMNPLKRKKLSSISSMLMTRDTPILRNVLAQSIAADSSNNALQMIANASSPTRASNNGDGEDGNGNGTDNMDHNDTNNNENNGNGNNLDDSNVGNVSGGNGSVYVSYGRKSGARSYHSSNGSDNSEKKFKYEEPASPFTDKSFDDESNSDRRPRESPPEFLGDIRLPSYLQQQQQFQQAQYQHHSQGSGGNGSASGSQKPEWKRYKQYTRNDIMSAIECVRNGMSALQASRKFGVPSRTLYDKVKKLGITTGTPRNRSTSKREPGPSSSSAAFPYGSLSGAAGAFGLYPNQDNQLSTSQDFDSEMEVENMKHHRPSPHASLLDPIFLQKLAAEARSEDFRGDALHAMALAAAAHAQFNGMGTSSRGHDPTTASVLSKFINRHDNDEREERERDRDREQDRERERERERDRERYERERERERNRSNGEQSLIKREPAEEIDDEMEEIDRAENLSVLRRESPPHMTPPIPHTPPFENRGVIVPPMKYLSPRSEPSSTTPPNVMDQPLALDTNELKQKFAETGVALTPTTTANYDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00319797;
- 90% Identity
- iTF_00320736;
- 80% Identity
- iTF_00319797;