Crip016180.1
Basic Information
- Insect
- Chironomus riparius
- Gene Symbol
- -
- Assembly
- GCA_001014505.1
- Location
- JXPV01013458.1:39061-41264[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.8e-07 0.0013 18.5 0.0 1 41 261 302 261 305 0.92 2 3 8.8e-05 0.24 11.2 0.0 8 35 316 342 314 351 0.86 3 3 1.7e-09 4.6e-06 26.3 0.0 2 38 369 404 368 409 0.92
Sequence Information
- Coding Sequence
- ATGTCTTTCGTAATCAACACACGAATCGacaaaaataaggaatttcTCGATGCTTTGCGGCATTCATGGGCAAATGAATTGGATAAAGATGTCAATTTCATATGCAAGGACAATATTGCTGTCAAAATCAACAGTTATGTCCTGGCATTGGCTAGTGAGTTTTTCAACTCACTTTTGAAGAATATTGTGGATAAGCAACTTCCCGCTATTAACATAATTGTGCCTGACATACATCCAGACATCATGAGGAAGGTGgttgaatatatttatattgGATATGTGTCGCTGGAGACTAGATTGATGGGAGaaTTCATCGAAGCCTGCAACCTCCTCCAACTCAAAGCTAACATAAGCTGCGAGAAAAAACTTGTCTTTGACAGTCCAGTTGCTGCAACATCAGAGCCACCTAGCATCACCACAATGATTGAAGATTTCAACACAGACATCAAATACACAACCACAACCGAAGATAATACCGAATATGAAATGACCCAGAAAACAGCAACCGGTGAACAACAAATTCTTGAAGTTTATGAGATTTCAAATATTGAGGATACAGACATTGCTTATGAGGATGCTATGGATGAGGATGAGACAGTTGAGGAGCATTTTGAATTAGTTAATGTTATACCGGAATCTGAGACCTCACCGACTATGGCTGTTGATACATCAAATGAGATTCTTAAAGTTAAGCaggataagaaaaagaaatctgTAATGGAATCGGTCGAATTGAGAAGCAGCAAGACATCTACGCCAAAATTGAATTCTAAAAATGTCGATGAGACAATCATGCAGCAGGcagttaatgaaattttgtctAATAGTAGCAGCTTCCGTCTTGTTAGCGAAAAGTACAACATCCCAAAGACCCTTCTATGGCGTCGTGCAAAGAAGCTTGGCTATGTTAAAACTGAAAAGCAGAAGGACGACATTCGTGTAATGGCAATCGAAGCGATCAAACAAGGAGAAAGTCTAATCAGCCTTAGCAAGCGCTATAATATCCCGATATCAACTTTACATCGTgagaaattaaagctttatgaGAAAGGTCAACTGCCTGAAAATGTTAACTTGAAGAATCGATCAAGAGGAGAGGATTATGATGATAGATTAAGGAATGCTATAACTGAGATTCTAAATGGAAAGAGTCAAAATGAGATTGCTAAAAAATACAGCATACCGAAAACGACAATTTGGAGAATAATCAAGAAAATGGACTCAAAAGCGGAAGGATCAACAACGCCAGTAACACCAAATTCAGAGATTGTTGAGCAACTGATGCAGTTGAGTAAGAAGAGAATGGTTAAGGATGACTCGAGCTTTGAGGACGATAAATAG
- Protein Sequence
- MSFVINTRIDKNKEFLDALRHSWANELDKDVNFICKDNIAVKINSYVLALASEFFNSLLKNIVDKQLPAINIIVPDIHPDIMRKVVEYIYIGYVSLETRLMGEFIEACNLLQLKANISCEKKLVFDSPVAATSEPPSITTMIEDFNTDIKYTTTTEDNTEYEMTQKTATGEQQILEVYEISNIEDTDIAYEDAMDEDETVEEHFELVNVIPESETSPTMAVDTSNEILKVKQDKKKKSVMESVELRSSKTSTPKLNSKNVDETIMQQAVNEILSNSSSFRLVSEKYNIPKTLLWRRAKKLGYVKTEKQKDDIRVMAIEAIKQGESLISLSKRYNIPISTLHREKLKLYEKGQLPENVNLKNRSRGEDYDDRLRNAITEILNGKSQNEIAKKYSIPKTTIWRIIKKMDSKAEGSTTPVTPNSEIVEQLMQLSKKRMVKDDSSFEDDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00319882;
- 90% Identity
- iTF_00320857;
- 80% Identity
- iTF_00319882;