Crip003950.1
Basic Information
- Insect
- Chironomus riparius
- Gene Symbol
- retn
- Assembly
- GCA_001014505.1
- Location
- JXPV01002218.1:6781-21902[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.6e-26 2.3e-22 79.2 0.0 2 89 20 105 19 105 0.96 2 2 0.49 1.3e+03 -0.1 0.1 13 35 246 266 236 266 0.78
Sequence Information
- Coding Sequence
- ATGGATGAACGTCGTTTATGTATATCTGATTTATATGAAATCAACGATGATCCAAAGCGTAAATTATTCCTTGATGATCTCTTTTTGTTCATGCAAAAGCGAGGAACTCCAATAAATCGACTTCCAATCATGGCAAAATCAGTTCTTGATTTATATGAACTTTATAACTTGGTGATAGCTAGAGGTGGTCTTGTTGATgtaattaataagaaattatgGCAGGAAATAATTAAAGGATTACATTTACCCTCGAGCATCACAAGCGCTGCATTTACTCTAAGAACACAGTACATGAAATATTTGTATCCATATGAATGTGAGAAAAAGAGTTTAAGTACACCGGCTGAACTGCAGGCTGCAATTGATGGCAACAGACGTGAAGGCCGTCGTACAAGCTATGGACAGTTTGAATCACAAATGCAACAGCAGCTACAATTGCCACAACTCCAAAGGTCGCCGATACCAAACAGTCTCCAGCAAATGTCACCTTTATCACTTGTGACACATGCACAACAGAATTCTCACCATAGACTGATGGGAGCACCAGGCGTTGTTGGTCAACTTCCAAGTATAGTTCCACATGATATTGAGCAGCGAATGCTTgaatacattaaattattccAAGCACCAAAAGATTTGAAACGCCCACAAAGCCCAGATGTTTCAAGGGAAGCATTAAATGCTTTGGAAATGTCGAGAATGGCATTATGGAATATGTATAACAATACAAGTCCACATAATCAGCACAATAACCCTAGTCCACCAGAAGTACAACAAGAAGCACTGAATTTACATCAACGAGAATCTCCATCTCCAATTCCATCAGCTCCATCACCAATATCTATAAAACGCGAACGTGATCTTCATGATTTAAATGACTATCCACCAGCAAAACGAGGCTTAATTCGATCAAATAGTGATCTCAATAGGAAGTCATCAATCactaataacaacaataataaatatgatCATCACATtggcagcaacaacaataattctCAAGTGACACCTATAAAAGACAATAGCAATAAGAAACGATCAGAATCACCTTCATTGACATCACagcaaattcaaaacaatGAGAATGGAACTCATCACCTTCAGTCGCCTGTACGACATCACAATAAACAGAATGGTCTTGATTCCATTGGCACGACAATATTAAATGGAATGCAATTCAAAATTGTCAGTAAAGAAAACTCATCGACTGGAGAGCCACAGTTGGTTGTGAAATTGGAAGtaaatggaatattgtttGAGGGTGTCCTCTTTCCAAATCCAACAAACTCATCGCCAGCATCTGCATCAACAACTCCCTCAACGGAACCAATGATATCGCCAGTCAAGCATTCGTCACCGAATCGGAACTCATTAAATGATGACCACAAGTTAACGCAACAAATGGTCTCGTCATCATAA
- Protein Sequence
- MDERRLCISDLYEINDDPKRKLFLDDLFLFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKSLSTPAELQAAIDGNRREGRRTSYGQFESQMQQQLQLPQLQRSPIPNSLQQMSPLSLVTHAQQNSHHRLMGAPGVVGQLPSIVPHDIEQRMLEYIKLFQAPKDLKRPQSPDVSREALNALEMSRMALWNMYNNTSPHNQHNNPSPPEVQQEALNLHQRESPSPIPSAPSPISIKRERDLHDLNDYPPAKRGLIRSNSDLNRKSSITNNNNNKYDHHIGSNNNNSQVTPIKDNSNKKRSESPSLTSQQIQNNENGTHHLQSPVRHHNKQNGLDSIGTTILNGMQFKIVSKENSSTGEPQLVVKLEVNGILFEGVLFPNPTNSSPASASTTPSTEPMISPVKHSSPNRNSLNDDHKLTQQMVSSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -