Csup004975.1
Basic Information
- Insect
- Chilo suppressalis
- Gene Symbol
- -
- Assembly
- None
- Location
- chr29:2663623-2680077[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.16 9 6.7 1.7 1 23 177 199 177 199 0.95 2 13 0.004 0.23 11.7 3.2 1 23 205 228 205 228 0.97 3 13 4.1e-05 0.0024 18.0 2.3 3 23 240 260 238 260 0.97 4 13 0.00027 0.015 15.4 3.7 1 23 266 288 266 288 0.99 5 13 0.45 26 5.3 5.7 1 23 296 319 296 319 0.96 6 13 0.03 1.7 9.0 1.6 1 21 327 347 327 348 0.94 7 13 0.024 1.4 9.3 1.8 2 23 356 378 355 378 0.95 8 13 2 1.1e+02 3.3 4.6 1 23 474 496 474 497 0.91 9 13 3.9 2.3e+02 2.3 1.7 1 20 505 524 505 526 0.88 10 13 1.1 61 4.1 4.9 2 23 534 555 533 555 0.96 11 13 0.0052 0.3 11.4 4.2 1 23 558 581 558 581 0.96 12 13 0.0065 0.37 11.1 0.1 2 23 587 608 586 608 0.95 13 13 0.00015 0.0088 16.2 1.0 1 23 614 637 614 637 0.98
Sequence Information
- Coding Sequence
- ATGCCTCGCAGAAAGTCAAATTTGGGCCGTCGTACTCGCCACACAGAAGGATCAAGAAGACGGCTTTCGAATATGACTGAGGAAGAGCGAGCATCCGTACGAGAGAGGAACAGGCTAAGCACCATCCAGACACGTAACATGGACCCAGCAGAAAGACGAGCAGCCAGGCTTGAGGATGCACGATTGCGAGCACGTCAGTCGCGTTCTGCAGCAACAAATTTGGTTCATTCTGAACGGAATGAACGTGAAAGGATAATGGCTAACGAAGGTTATGAATCATTGCTTACTGAAGTGACAATGCCAGGTCCTGACACCGAAGATGATAGCGGCTACAAGAATATGTTCGCCAGTGTCTGGCTGAAGACCGAACTGCTGGACGTGAAGACCGAACTCCTGGATACTGCTGAGGAGAAGATAATAGACCTGGAAGGAAATGTGGCGGAGACTAGTACAATTGTTAAACAGGAGCCTATCAGGAAAACGCTGCTCCTACCAAAGTCTGCGCAGAGGCGTCAATACACGAAGGAGTTTAAATGTGAACAATGTGAATACACCACGGTATATAAGAATTGTTTGGATTTGCACGTATTGGGTCATGCCGATACGAAGGGCCACAGATGTACGCAATGCAGTTTCGCCACAAAGCTGCCCAATTCTCTACAAAGGCACATAAAAACCAAACACACCGTGGACGTGAAACCTGCGCCAACAGTGAACTGCCACTTATGCGACTATACTACGGTGTACAAGTGGAACTTGCGTTCTCACATGCGCAAACATTCCGAGGATAAACTTTACAAGTGCACGGAATGCGAATACGTAACCGCTTACAAACACAACTACCAGAAACACGCCAAGACTCACGCAAAGGGCAAGAACGTTGTGTTCAAATGTGACAAATGTCATTTCAAAACCAAGTTCATGGGCCACATCACCAGACATCTGGCGAAGATACACAACGAGATTACTGAAACTGCCTTCAGATGTGCACACTGCGACTTTTCTACAGTAACCAAATGGAGATTGACCATCCACTTGCACAGAAGCGGACGGAAAGAACTTATTCGATGCAATAATTGCGGTTTTGCATCATCGTATGCATGCGAAATGAAAAAGCATAGACGGGATGAACATTACAACTTGACTTTCTTGAAAACCGTTTTGGTGGAGCCCAGCGACATGAAAAATGAAAAAACAGAACAATTAGAAGAGCTGACAGAGTCCAGTGAAGTAAGAGAAGAGACAAAAGACCAATTGGATGAAGTAGAATATGAGGAATTCGAAGGAGCAAACGAAGAAGACTGCAACAAACCGCAGAAAAAGAAGAAAGGTGAAAACTTTGGAAAGTATAATACGAGCCCTGACTGCGTTGACTGGAAATCCATAAAAGTTTTGGAGTCCGAGGACAAAAGCAAACCGTTCCAATGCATCAGTTGCAAATACAGTTCTCGATTCAAAGCTTCAGTCCAACGCCACTACCAAAGGCATCACACAGGTGACGAAACGAAACCGTACCAATGTATAAACTGTGACTTTTGTACCAAAACTAAAGATCAGATCGCTTTGCACAACAAGCGGAGTAAATCTGGAATCGTTTTAAATTGCAAAGAGTGCAGTTTTCAAACTAAATTCAAATGCACTTTAGTTATGCATCAGAAGAGCCATTACGCTTATTCGTGCAGCGAGTGCAATTACAAGTGCAAAATTAAATATGATCTATCGAGGCACTATAATTATGCCCATTTGAACGGTGTTTGGAAATGCAAATACTGTGATTATAAGGCTCCTAGGAGAGACGGTCTTTTGGCACATGAAACCATTCATACTGGTTACAAACCGTACTCTTGTGGTCTTTGCAGTTACACATCAGTGAGAAAGTCCCTTCTCAACGTTCACTTGAGACGGTTTCATAGTGATACGAAAACTGGTATGGTTGTTGTGAGTAAAGATAAGATTGATGCGTTGAAAATTGTTGAAGACAATGAAGATGAGGAGAATAATTTATTGGGTTTTGAAGGTTTAATCGGTTAG
- Protein Sequence
- MPRRKSNLGRRTRHTEGSRRRLSNMTEEERASVRERNRLSTIQTRNMDPAERRAARLEDARLRARQSRSAATNLVHSERNERERIMANEGYESLLTEVTMPGPDTEDDSGYKNMFASVWLKTELLDVKTELLDTAEEKIIDLEGNVAETSTIVKQEPIRKTLLLPKSAQRRQYTKEFKCEQCEYTTVYKNCLDLHVLGHADTKGHRCTQCSFATKLPNSLQRHIKTKHTVDVKPAPTVNCHLCDYTTVYKWNLRSHMRKHSEDKLYKCTECEYVTAYKHNYQKHAKTHAKGKNVVFKCDKCHFKTKFMGHITRHLAKIHNEITETAFRCAHCDFSTVTKWRLTIHLHRSGRKELIRCNNCGFASSYACEMKKHRRDEHYNLTFLKTVLVEPSDMKNEKTEQLEELTESSEVREETKDQLDEVEYEEFEGANEEDCNKPQKKKKGENFGKYNTSPDCVDWKSIKVLESEDKSKPFQCISCKYSSRFKASVQRHYQRHHTGDETKPYQCINCDFCTKTKDQIALHNKRSKSGIVLNCKECSFQTKFKCTLVMHQKSHYAYSCSECNYKCKIKYDLSRHYNYAHLNGVWKCKYCDYKAPRRDGLLAHETIHTGYKPYSCGLCSYTSVRKSLLNVHLRRFHSDTKTGMVVVSKDKIDALKIVEDNEDEENNLLGFEGLIG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -