Csup000141.1
Basic Information
- Insect
- Chilo suppressalis
- Gene Symbol
- -
- Assembly
- None
- Location
- chr27:10120484-10178019[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.067 3.9 7.9 3.7 1 19 547 565 547 567 0.95 2 12 0.071 4.1 7.8 2.5 2 23 578 599 577 599 0.95 3 12 0.18 10 6.5 5.5 1 23 603 625 603 625 0.96 4 12 5.6e-06 0.00033 20.7 1.8 1 23 630 653 630 653 0.97 5 12 0.11 6.3 7.2 0.0 1 19 687 705 687 708 0.93 6 12 0.67 39 4.7 4.0 3 21 715 733 712 736 0.85 7 12 0.059 3.4 8.1 0.1 2 20 740 758 740 760 0.94 8 12 0.54 31 5.0 1.7 3 23 771 792 769 792 0.87 9 12 0.00071 0.041 14.1 1.0 2 23 798 820 797 820 0.95 10 12 0.00038 0.022 14.9 0.8 2 23 867 888 866 888 0.96 11 12 7.8e-06 0.00045 20.3 0.6 1 23 894 916 894 916 0.97 12 12 6.3e-05 0.0036 17.4 0.3 1 20 922 941 922 942 0.95
Sequence Information
- Coding Sequence
- ATGGCGTTTTATAATCGTTGTGTTAACTGTACTATTACCTTACGAAATCCACGTATTGTATCACGGGGAGTGTTGGAACTAGATACACCTTTACGTGATCTCTTGATATCTTGGATTTCACCTATTGAGGTTACATCAGAATACAGAGTTTGTGAAGAATGCTTTGTTATTCTTCAAACTCAAGCTCAGATGGATGAACCTTGCCGAAATTATGGACACAGATCAGTATGTTTGGGATGTGGTGTGTCCGTTCTACGAGCAAGAAGCATTCCTATGGGTAGTAATCGTCATGAGTGCACTGGAATACAAGCATGGGTGCCACAGATTCAGGCAGACCTCCAAATATTTACAAGAGTTTGCAGACCTTGCTGGAGGAGAGCTACTAGGGCGCAAGCAACAAGCACAGCAAGCTCACAACAAGAACTTTATAAATCAAACGGTCTAAAACCACCGCAAGGTAATGCTGTTAAGGAGTGTGACCCGAAGTGTACAGATTCGACCAAAGATAACCAAGACGGCGCATTTAACGAGAAAGTGTCGGATAAAAAAATTGAAGATTCCAATCCAAAAGCAGAGTTATTAGCTGACAGTTCAAAACATTCAGAGGATATCGCAGATGGGTTAGTTTCGGAACCTTTAAAGCCTAAAGCCACATACAGGAATCCAAGGCTAAAAATCAAAGATGAAGATGCAGAAGTAATTGAAGAATATTTGAGTGACTTTGAGAGTGAGCCAGAATGTCAACCTGAGACTGAATCACAAGAGGACGCTGCAACAGATGACACTTCGGATCAATTGTTACTGTGTCGTGGATGTTTCGCCACTGACGTCAAAATGTTCGATCTAGACTCGATGGATTTGAAGCAAACATTTGAAGAATTCGTCGGAAAAACGAAGGTGGAGGAATTGCCACATTATTTGTGCTCGTATTGCGCGACATCGCTCGTCAGGTTCACGCAGTTCAGGGAGAGGTGTCGACGCGCGGAAGTGTTGCTGCAACACTTGAGCGACAACAACATGCTAAATCCCACACTCATCAAATCCATAGACAGGCCATATTACAAAGTAAACTTGAACTTGTCTATATCCAAACTCGTGCATATGGAAACCGATGAGATAGAAATCAAATCGGAAGATGATGATGAAGAAGACGATGTAAAATCAGACCGCGAAGAAAGTGGAATGTATGCAAATATTGTAACCAATGACAAGACGTTACAAACGGATGAAGGAATTAGTGAAACTAATCCATCCGTTAAATATTTACAAAAGGATGATGTAGCAAACATGGATATTGATCGATCCATTGTATATTTGCAAGAAAATGAAGAAGGAATTAGTAATATAGGACAACAAGATGTTGAAGCGGAAATCGACAATATTGGACAATACGTGGATTGCATCGAAGAAAATGATCCAGATATAAGTGATACCAAACAATCTGAAGATGACATGGACACTAAAGTTATAAAAGAGTTTTTAAATAGGATAAATAAAATAAAAGTTCCTTCAAAAAAGAAGAGTATAGTGGATACGTATGAGAAGGAATTCTCTATGGAAGTAAAGATTTTGACCAAAGAGGAGCAATTGCAATTCGTGCAGGCGAGGAAATCGTCAAGCAACTATTTAAATTCAAAATTTAGGTGCGACCATTGTTTCAAAGGCTTCATGTCTTCTGAAAAGTTTAGAAATCACTTCAACTGCTTCCATCACCCGACCATCGGTGAGCTCGAGTGTTCGATGTGCCGAGCTAGATTTGACAACAGAAAGAAGCTTCACTATCACATGGTCAACCACAAATACTTATTCAAATGCAAGATATGCGGGTTCAAAACCACAAGACGCTTTGGTGCCAAAAATCATCATTACAAACATGCAGGACGAAATTACACGTGCGAATATTGCGGCAAATCATTCAAATATAGCACAACTTACTTGTCACATTTGAGGCTAATCCACCGGACCGGCCTCAATGTGTGGTGCAGATTGTGCGGGGATTCATTTTTGAGCGATTTAGGTCTCAAAGCTCATCGAAGATTAATGCATATGAATATTGAATATCAGTGTCTGCAATGCGGTTTAAGTTTTCTCAACGAAAGTGCGTTGTTAGTACATAATAATGGACAGTGTGTGCATAATTGTTGTGCTCAGTGCGGTGAAAGTTGCCCCGATGAGGAGTCTTTAAAAGTTCATTTTACTGATAAACATGGTAAAGCCAAATGTGCCTTGTGTAATGTCGAGTTTAAGTCCCGTGTTGCGTTAGAGAGTCATTTGGAAAACTCCAGTGCGAAGTGTAGGAACGTTAAATGTTGTGTTTGGTGCGGGGAATGTTATTTGACGTCGGATTTGTTAAATGAACACATCGCTTTTCAACACAACAAATACAAAGTTTCCTGTTCTGTGTGCAACAAGGGATTCCCCACCAAGAAGTCGTACAATGACCACTACAAGCAGACCCACTGGGAATCTAAACCACGCGGGCGACGCGACTTCATGACGTGGCCCAGACAATGGGGCCTCGTCGAGGGGGAGGAGGGAACATATATATCCACATATAACTCGCAAACCTCTGACCAACAGGAGGGTAAGGGAGGGATAGTCTGTGAACTGTGCGGGAAAACTTACCCGAACAAATTGTTGCTGAAGTTACACCTTCACCGACATAGCGGTGTGAAGCCGTTCGCCTGCTCGGTATGCGATAAGAGATTCAGCAATTCTATGTCACTCACGGTACATTCCCGGGTTCATACAGGAGAGAAACCTTATAGCTGCGAGTATTGTCCTAAAAGGTTTGCAAGAAAATCCGCCATCAACAGGCACACATTGCCTATTAATGTCCCCACTGCGGGGGCACAGGCCTTCCCTATGGATGGAATAGGGAGATTGGGCCATGACCCACCACGCGGGCCCAGTGCGAATTGGTGGGTGCTAACGACTGCAGATGCAGCCGGGACCGACGGCTTAACGTGCCTTCCGAAGCACGGAGGAGCTCGAGTTAGAAGATTTTTGGTCACCCAACCAATGATTGACCACTGCGAAAGTTGCATAACTTGCCAAATGCAAGCTGAACAAGCTAACCACCTGTGTTTCGTGATCGTGGTCGCCGTAGAAAAAGAAGGGGGGGCAAGCAAAACCGAGCCGCAGAAAAGAAGATTTATAAGTTATCGAAAGCTATGCTGTAACCAATTAATAAGAAAAACAGAAGGTCCTGTTCTTGTAAGTACTATCGATCATGATGACGCGGTTTCACTATTGTCTCATCATTTAGATAGTGATGCTTGGAATGATATTAGATATTCAGAGACACAAAAATCTTATATATTTTCGCCAGGATTTAAAGAACATGATTTTAATGAGGAGGTTAAAGAATTCGAATCTCCCAAACATTTGGCTCTTTCTGATAAAGCTTTTGCTGGTCTTACGATTGTGTGGCCATCAAGCGGAGGTAATAGAAGTGCGGAGACATCATGTGATGAAACATGTAAAGATCCTTTGGTGAAATCAATGCTGCAAAAGATACCTCCAACGAGCACACATCTCTTCAAACCAGAGCAGTTCACTTCCGTGGTTGAGAGAGCTGGAGGAATAAAAAAATGTTTCTGGCCTACACTGAAGGTGATTTTAGAGCTTGCTGTAGCTATGGAGTGCGAAATAATTATTCGGTCGCACCGAACAATACAAACAGTAATTCCTTTCGCGGACGCTTGTTCCAAGCTAGCGCTAAGCAGCAGCCACGACGACGAAAAGGACGCAAACGTAATGCGTTCCCGTCCAACTTTCATAAAGATTCTCCGAAAAGTTATCCGAAAGAACAGCATTACCTTCAAGGAACTACAGTTAGAGTCTCGTAGGAACCCTGAATTTCGCCAGTTTCTGTGTACCAATGGGCAGGCTGAATTATTGTGCACTGCTATAAATAAGACACCCTCGCAGGGCTTTGGGGCCGTGCTGAGACCAAACGGTAGGCAAGTAATTCGCCACGATATATGA
- Protein Sequence
- MAFYNRCVNCTITLRNPRIVSRGVLELDTPLRDLLISWISPIEVTSEYRVCEECFVILQTQAQMDEPCRNYGHRSVCLGCGVSVLRARSIPMGSNRHECTGIQAWVPQIQADLQIFTRVCRPCWRRATRAQATSTASSQQELYKSNGLKPPQGNAVKECDPKCTDSTKDNQDGAFNEKVSDKKIEDSNPKAELLADSSKHSEDIADGLVSEPLKPKATYRNPRLKIKDEDAEVIEEYLSDFESEPECQPETESQEDAATDDTSDQLLLCRGCFATDVKMFDLDSMDLKQTFEEFVGKTKVEELPHYLCSYCATSLVRFTQFRERCRRAEVLLQHLSDNNMLNPTLIKSIDRPYYKVNLNLSISKLVHMETDEIEIKSEDDDEEDDVKSDREESGMYANIVTNDKTLQTDEGISETNPSVKYLQKDDVANMDIDRSIVYLQENEEGISNIGQQDVEAEIDNIGQYVDCIEENDPDISDTKQSEDDMDTKVIKEFLNRINKIKVPSKKKSIVDTYEKEFSMEVKILTKEEQLQFVQARKSSSNYLNSKFRCDHCFKGFMSSEKFRNHFNCFHHPTIGELECSMCRARFDNRKKLHYHMVNHKYLFKCKICGFKTTRRFGAKNHHYKHAGRNYTCEYCGKSFKYSTTYLSHLRLIHRTGLNVWCRLCGDSFLSDLGLKAHRRLMHMNIEYQCLQCGLSFLNESALLVHNNGQCVHNCCAQCGESCPDEESLKVHFTDKHGKAKCALCNVEFKSRVALESHLENSSAKCRNVKCCVWCGECYLTSDLLNEHIAFQHNKYKVSCSVCNKGFPTKKSYNDHYKQTHWESKPRGRRDFMTWPRQWGLVEGEEGTYISTYNSQTSDQQEGKGGIVCELCGKTYPNKLLLKLHLHRHSGVKPFACSVCDKRFSNSMSLTVHSRVHTGEKPYSCEYCPKRFARKSAINRHTLPINVPTAGAQAFPMDGIGRLGHDPPRGPSANWWVLTTADAAGTDGLTCLPKHGGARVRRFLVTQPMIDHCESCITCQMQAEQANHLCFVIVVAVEKEGGASKTEPQKRRFISYRKLCCNQLIRKTEGPVLVSTIDHDDAVSLLSHHLDSDAWNDIRYSETQKSYIFSPGFKEHDFNEEVKEFESPKHLALSDKAFAGLTIVWPSSGGNRSAETSCDETCKDPLVKSMLQKIPPTSTHLFKPEQFTSVVERAGGIKKCFWPTLKVILELAVAMECEIIIRSHRTIQTVIPFADACSKLALSSSHDDEKDANVMRSRPTFIKILRKVIRKNSITFKELQLESRRNPEFRQFLCTNGQAELLCTAINKTPSQGFGAVLRPNGRQVIRHDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -