Basic Information

Insect: Chilo suppressalis
Gene Symbol: L
Assembly: None
Location: chr4:14552384-14689222[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 1.2e-06 7.2e-05 22.8 1.7 1 23 150 172 150 172 0.99

2 17 0.53 31 5.1 5.8 1 23 178 200 178 200 0.97

3 17 5.3e-07 3.1e-05 23.9 2.7 1 23 206 228 206 228 0.99

4 17 2.2e-05 0.0013 18.8 0.1 1 23 234 256 234 256 0.98

5 17 0.00056 0.032 14.4 0.0 2 23 272 294 271 294 0.95

6 17 2.3 1.4e+02 3.0 0.2 3 23 318 340 316 340 0.79

7 17 0.25 15 6.1 0.1 3 23 392 412 391 412 0.97

8 17 0.55 32 5.0 0.0 3 20 427 444 426 445 0.86

9 17 0.00025 0.015 15.5 0.6 1 23 455 478 455 478 0.94

10 17 0.027 1.6 9.1 0.1 1 23 483 506 483 506 0.92

11 17 0.068 3.9 7.9 0.9 1 23 569 593 569 594 0.94

12 17 0.00017 0.0096 16.1 0.1 2 23 651 672 650 672 0.96

13 17 0.049 2.8 8.3 0.0 1 23 680 702 680 702 0.97

14 17 1.4 82 3.7 0.7 2 23 710 731 709 732 0.93

15 17 0.39 22 5.5 0.6 1 23 806 828 806 828 0.94

16 17 0.0029 0.17 12.2 0.1 1 20 836 855 836 858 0.95

17 17 0.084 4.9 7.6 0.4 1 23 865 887 865 887 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	1.2e-06	7.2e-05	22.8	1.7	1	23	150	172	150	172	0.99
2	17	0.53	31	5.1	5.8	1	23	178	200	178	200	0.97
3	17	5.3e-07	3.1e-05	23.9	2.7	1	23	206	228	206	228	0.99
4	17	2.2e-05	0.0013	18.8	0.1	1	23	234	256	234	256	0.98
5	17	0.00056	0.032	14.4	0.0	2	23	272	294	271	294	0.95
6	17	2.3	1.4e+02	3.0	0.2	3	23	318	340	316	340	0.79
7	17	0.25	15	6.1	0.1	3	23	392	412	391	412	0.97
8	17	0.55	32	5.0	0.0	3	20	427	444	426	445	0.86
9	17	0.00025	0.015	15.5	0.6	1	23	455	478	455	478	0.94
10	17	0.027	1.6	9.1	0.1	1	23	483	506	483	506	0.92
11	17	0.068	3.9	7.9	0.9	1	23	569	593	569	594	0.94
12	17	0.00017	0.0096	16.1	0.1	2	23	651	672	650	672	0.96
13	17	0.049	2.8	8.3	0.0	1	23	680	702	680	702	0.97
14	17	1.4	82	3.7	0.7	2	23	710	731	709	732	0.93
15	17	0.39	22	5.5	0.6	1	23	806	828	806	828	0.94
16	17	0.0029	0.17	12.2	0.1	1	20	836	855	836	858	0.95
17	17	0.084	4.9	7.6	0.4	1	23	865	887	865	887	0.94

Sequence Information

Coding Sequence: ATGTCTCGAAGGAAGCAAGCGAAACCGCGATCGTTGAAACCGGAAGACGAAGAATGGAACGAAGGTACACCACGTGATGAAAACGAGATGGCAGCTACCGAAGAACAAGAAGATGACGACTCCGGAGACAAGGAAAAGAATGATGAAGTTGATGAACCTAACGCGAGTGAAGGACCAGAAGATGGTGAGGATATACAAACAAATGGAAATAAGCCGGCCGATGACTACGACGTCGATGACACGGCTGATATGGCGGACATCAAAACCGAGAGCATGGACAGTTTCGAATCAGAAGCCCTGGGAAGTGTGGGCAGCACGGCGGGAAGCTCATGGCCGTCTTCAACGCCTGAGCCGTCCCCATCGCCCGCATCCACGCCCACCTCCGCTGACGCAGCCGATGCTGACGCCGAACCACCGTTCACGCTGGGCGCCACCGAGCACACGCCCTACCAGTGCCAGTTCTGCGACAAGGCCTTCCCTAGGTTGTCTTACTTGAAGAAACATGAACAGACGCATTCGGACCAAATGCCTTTCCGGTGCGAGTTCTGTTCCCGGCTGTTCAAGCACAAGCGTTCACGGGATAGACACGTGAAGCTGCATACCGGAGATAGGAAATACCGCTGTGCGCATTGTCCTGCTGCTTTTTCTAGAAGCGACCATTTGAAGATCCATATGAAGACGCATGATAATCAGAAGCCGTTCCAGTGTACGGTGTGCAACCGAGGGTACAACACAGCAGCGGCGCTGACGTCACACATGCAGGGACACAAAAGGGACAGGGAGGGACGTGAGCCTGACCGCCGACGGGTGCTGCGCTGTTTACGTTGCGGGGATGCGTTTAGGCGCCCTGACTTATTACAAGCTCACATGGCCAGTGCACATGGAGTGGAGACTCCTGCGCTAACGCCACCGCGGCGAGTTGCATCGCAGCCACCGCCGACGCTACTCGCTTGCATGTACTGCACTCGCGACACTTTTACGAGTATGGAACAACTGCAACTCCACGTACGTGCAGCACACTCCGCATTACTCAACGGGGAGACGCCCATGCAGGTCGACCAACCGAAACCCACGGATCTCAGCAGACGAGCGGCAGAAGACGCGCCGTTAGCGAAGCGACCTAGGTCCGGATCTGGGACGCCGCATACAACCTTATCTCCCAGCACTCTTTTGTGCAACCAGTGCGACGCGGCACTCCCTGACTTTGAAGCTTTCCGGAATCACTTAAAAGGACATTTAGAAGAAGGAGGAGAATTGGGGAGATCAAGTCCCGCTCCGTGCTTGCATTGCGGGGCTACATTCGCTGATGCGGCGGCGTCTGAACGACATCTCGCCGCATTCTATTTGGCTGTGTCGTGCGAATACACCTGCCACAGCTGTGCCAGGAGCTTTTCCGCACCAGACGATTTGCAGAAGCATCTTCTAGATTTACATGCTCATCATCTGTATCGGTGTTCGCTGTGCAAAGAAATCTTCGACTCCAAAGTAGCTATTCAGGTGCACTTCGCCGTGGCCCATAGCGGTGAGAACAAGGTGTGGATGTGCCGAGGGTGCGGGGGCGGCGCGGGTCCGTTGCGGTCGGAAGCGGAGGGCGCAGCGCACGTGCGTGCACGACACGCGGCGGGTGCGGCACGGTGCACGTGCGGCGCGGTACTGGGCGGGCCCGGCGCTGGACCCGGCCGTCTGCCGCGCGCCGCCCGCGCTTACCGCTGCCCCGCGCCCGCCTGCACCGACACATTCGCCGTGCACTACCTGCTGGAGCGACACGTGCAGACGCACCACGCGCCACAACACCCGGCGATAAACGGTGACATGTCGAGAGTAAAGCGTATGGACAACAACAACATCTCTGATGGCGTCGACGGGAACTGTTCACCGCGCACGCCCGGCTCGGACGGGAACGGGCCCGTGGTGGAGGAACGAAGGCGGAAAAACGGCGCAGTAGCACTGCAATGTGCGTACTGCGGCGAACGTACCCGCAGTCGCGCCGAACTAGAGGCTCATACGCGCGCTCACTCGGGCGCTGCCGCTGCGAGGCATAAGTGTCTGATATGCGATGAAGTGCTCCCCTCAGCGGCGGTGCTTGCCGAACACAAGCTTACACATTGCAAGGTTGTTGCTGGCGACACATGTGCTCGATGCCGTGCTAGGCTGCCGTCCGAAGAATCATTCCTAACCCACATGGCGCGACATCATCCCACGCTGCCGGCACCATGCGTTGTTTGCCGGCAAACTCTCGCGTCAGAGGCGGAGGCAAGGCTTCACGCTCGTTTCCATTTGCGACCGGCAGAAGACGAACAACGGTGCGCGATATGTTTGAGGGCATTGACAGAAAGTGAGACAGGCGAAGGGGCTCGCGCTTGTTCTTCGTGCTACGCTCGGCACGCCGCCCCTCACCCCCCTCCACCAGCAGATCACGACTGCCGCCTTTGTAGACGCACTCTCGGTTCTCCTACGAGACTTCAAGCGCACCTCATAGAACACACGTTCGCCGGAATAAGCGCGTTCACCTGCTACCTCTGCTCGGCAGTTTTCACCAGCGCAGCCGGACTGCAACGTCACCTCCCCGAACACGCAGCAGCGCCGAAACCGTTCGACTGCGGACGGTGCGGTATGAAATTCTTCTTCCGGGCCGAGTTGGATAATCACGCTTTCGTACATCTAGAGGAGGCGGAAATAGCACAGAGAGCGTTCTATGAGGCCTACGCGAGAGGAGCAGCATCGGCGTGGGCTGCGTTGGCACCACCGGAAGCGGTACCTCAAGCTGCACAGATTCCACCTCCCGTGCCACCATTGGCCGAAGTTAAACGAGAGCCAGACATAAAAGAAGAGCGCAACACCGACGAGTATATTGAGGTAGCTTCTCCTCCACCAGCCCCTCCGCCAGAAGTTCCGAATCCTTCACCTCCCCTTGTAGTGAAAGAAGAGAAACCCGACGAAGACTGA
Protein Sequence: MSRRKQAKPRSLKPEDEEWNEGTPRDENEMAATEEQEDDDSGDKEKNDEVDEPNASEGPEDGEDIQTNGNKPADDYDVDDTADMADIKTESMDSFESEALGSVGSTAGSSWPSSTPEPSPSPASTPTSADAADADAEPPFTLGATEHTPYQCQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCPAAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGREPDRRRVLRCLRCGDAFRRPDLLQAHMASAHGVETPALTPPRRVASQPPPTLLACMYCTRDTFTSMEQLQLHVRAAHSALLNGETPMQVDQPKPTDLSRRAAEDAPLAKRPRSGSGTPHTTLSPSTLLCNQCDAALPDFEAFRNHLKGHLEEGGELGRSSPAPCLHCGATFADAAASERHLAAFYLAVSCEYTCHSCARSFSAPDDLQKHLLDLHAHHLYRCSLCKEIFDSKVAIQVHFAVAHSGENKVWMCRGCGGGAGPLRSEAEGAAHVRARHAAGAARCTCGAVLGGPGAGPGRLPRAARAYRCPAPACTDTFAVHYLLERHVQTHHAPQHPAINGDMSRVKRMDNNNISDGVDGNCSPRTPGSDGNGPVVEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAAAARHKCLICDEVLPSAAVLAEHKLTHCKVVAGDTCARCRARLPSEESFLTHMARHHPTLPAPCVVCRQTLASEAEARLHARFHLRPAEDEQRCAICLRALTESETGEGARACSSCYARHAAPHPPPPADHDCRLCRRTLGSPTRLQAHLIEHTFAGISAFTCYLCSAVFTSAAGLQRHLPEHAAAPKPFDCGRCGMKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALAPPEAVPQAAQIPPPVPPLAEVKREPDIKEERNTDEYIEVASPPPAPPPEVPNPSPPLVVKEEKPDED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01437318;
90% Identity: iTF_00448363;
80% Identity: -