Csup004694.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chilo suppressalis
Gene Symbol
RTase
Assembly
None
Location
chr14:21423435-21439665[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 5.9e-06 0.00034 20.6 2.0 1 23 1276 1298 1276 1298 0.99
2 9 3e-07 1.7e-05 24.7 1.0 1 23 1304 1326 1304 1326 0.99
3 9 1.4e-05 0.00082 19.4 2.1 1 23 1332 1354 1332 1354 0.99
4 9 2.1e-06 0.00012 22.0 1.0 1 23 1360 1382 1360 1382 0.99
5 9 2.3e-06 0.00013 21.9 1.4 1 23 1388 1410 1388 1410 0.99
6 9 3.2e-06 0.00018 21.5 6.5 1 23 1416 1438 1416 1438 0.99
7 9 5e-07 2.9e-05 24.0 4.0 1 23 1444 1466 1444 1466 0.99
8 9 3.8e-07 2.2e-05 24.4 2.6 1 23 1472 1494 1472 1494 0.99
9 9 8.6e-06 0.0005 20.1 1.1 1 23 1500 1522 1500 1522 0.98

Sequence Information

Coding Sequence
ATGCATATAACACAACACAATTGTGCTTATTACAAACAGAATAATAGCGATAGGTACTCTGTCTCTGTCGCCTCCCGCCTCATCCAGCATCTTTCCGAGGTGGGCCCGAATCTTTCCCAAAGCCAATTTGGGTTCCGCGTGAGACGCTCCACCATTGACGCGCTTACGGGGTTGAGGGAGCTGGTGGAGGATGCGACTAGCAGGGGGGAACGGGTGTTGGCGGTGTCATTAGATATCGCCAACGCTTTCAACAGCCTCCCCTTTCGTACTATTCTGGAGGCGCTCCGATATCACAGGGTGCCCCAATACTTGATGCGGGTCCTTAGTTCCTACCTGGAAGGGAGGGACGTTGTTTTTACCGACCAGAGTGGTGTGGCCGACCGTCACCCGATGTCCCGCGGCGTTCCACAGGGTTCCGTTCTGGGACCCCTCTTATGGAACGTCAGTTACGACTGGGTTCTGCGTGCCGCCCTCCCCCCGCGAGTGAAATTATTCTGCTACGCCGACGACACTCTCGTCACCGCGAGAGGGGGGGACTTGGAGCAGACACTAAGCCTAGCCTCAGCGTACACCACCCTGGTCGTAAGGCGCATAGAGGCGCTGGGCTTTAAGGTAGCCCTGCATAAGACCGAGGCCCTTCTGTTTCATGGGCCTCGCAGGGGAGCACCACCAGGCCACGAGATAATAGTGGCCGGTGTTAAAGTGCCTTTGAAGCGACACATGAAGTATCTGGGTCTAGTGATAGATGGCAGGTGGGGGTTCGACGAGCATTTCCGACGTCTCGAACCCCGCCTTTTGAGTGCTGCCGATGCGCTTGCGCGTCTTCTCCCTAATGTTGGGGGCCCGAGTGCAAGAGTCCGGCGTCTTTATGCAGGTATAGTGCGCAGCATGGCGCTGTATGGCGCCCCGGTGTGGGCAGATGCTCTTAGTTCTCGGGCCATTGCTTCCCTCCACAGGGCGCAACGTGCTCTGGCCTTGAGAGCCATAAGAGCATACAGTTCGGTGTCCCACACCGCAGCGTGCATTATTGCTGGCACTCCCCCGTGGGAAATTTCAGCCCACGTTCTGGCGGCTGCCTACCGCGTCAGAACAGACGCACAGGATAATGACCGGCGCCTGGCGCCGAGGGAGAGGGCCTCAGCTTTGGAGGAGGCGAAAATTGAGGCATTCCGCACGTGGTTCGAGGAGCTCGTAGAGCAAAGGGGCTCGGCCTCGGTCTCTGGCACTTTGTCCAGGACCTTGGAGGCCATGCAGGCCTTTCTCACCACATGGGCGGATCGGCGCCACGGTTCGCTCTCCTACCATCTGGTCCAGGTTCTTAGCGGCCACGGTTCTTTCGGCCGCTACCTGCACCGCATCGGCAGGGAGCCGACCCCCGAGTGCCACCATTGTGACGCCGCTGAGGACACCGCACAGCACACTTTAGAGGTGTGCCCAGGCTTCTCCCAGCGGCGGCAAGAGTTAACCGCCATCATAGGCGAGGACCTCTCTCTTCGAAACGTGGTCTGCGTCATGTTGGAGGGGGAGGAAATGTGGGATGCGGTGAACTCATTCTGCGTCGATGTTATGACGCAGAAGGAGGACGCGGAGAGGGCCCGGGAAGAAGACCCAGAGGCCACTCCTTGCCGCCGCCGAAGGTTGGGGCCCGCCTACTTCCTCTTGACGGTAACCAGCGGGGTCCAGGCCCGGGAAGCCCGGGCCCTGCATTGCACCGGTTGCCGCCAGTCGCTGATCCCCTGGATGCCCCTGGGGATCACCGGCCCTCCCTTTTTGGGGGGGTCCGTGGGTCAGAGAAATATTTACGTGTCGTGTCGAGTTGACGCTCAAACCTCTGTCTGTCTAACCCATAATAAATGTATGAAACCGATGCGTCACGACACATCACGACGGACGCTAGGCACGGAACTAGCAAATGAAATACTAAAGAAAAATAATACATCAGAACACCAGCTTGCATTGCGTAAAAATAAGCTCACAGTATCGAACTCGATGACACTGTTGCCCACAGATTACATAGAGATAGATAAAATTATAGGTAATCTGAAGGTACATAGCGCGCCAGGTATTGACAATATTTCCAACATAGTACTAAAAAACTCCCGTCAAATTCTGTGTTCTATGATAGCACATTTATGTAACTTAAGCATTTCAACTGGCATCTTTCCGAAGATTTTCAAACAAGCCGTCATAGTTCCTATACACAAATCTGGTGATAAGGAATCGGCTTCTAACTATCGCCCTATCTCTCTACTGAGTACTATAAGTAAGATAATAGAAAAAGTGGTTAACATGAGATTAATGAGCTATCTGGAAAGCCAAAAACTACTTGCTGAAAACCAATACGGTTTCCGTAATAACAAAAGCACAGAGGATGCAGTTGCCCTACTTTCTACTAAGGTATCTAAATTACTTGACAAAGGCCAGTGTTGCATTGGAGTGTTTTTAGATCTAAAGAAAGCATTCGATACTGTGTCTATACCAATTCTCCTAGCATCGATGGAAAGTTTGGGCATACGAGGTATAGTGTTGGAATGGTTTCGTGACTACCTCACAGATAGAGGCCAGTCCATCAGAATAAATGATTTTCATAGAGACTCTTTGCACACTAATTTTGGAATCCCACAGGGAAGTACAATTGGGCCCAGCCTCTTCCTCATCTATGTCAATGAGCTTTGTAAGATACAATTGAAGAATGGATGCACATTGGCCTTTGCAGACGATACTACTTTGATCTTCTGGGGGCAAACTTGGTCACAGGTTCAAAGACATGCCGAAATTGGATTCAAAGTGATAATGAAGTGGTTAGATGACAATTTGTTGACACTTAACATAACGAAAACCAAGTATATATGTTTTAGAGTTAGTAGCAAAACTGATCCTCCGCCGCAATTTAATATAAAGGTCCATAAAAGAAATTGTAATGACGGTCTTTCAATTAACTCATTTGGTGGATGCGATTGTACTACACTTGAACAAACGCTTACCCACAAATATCTCGGTATCATATTTGACAAGAATCTTTCCTGGCAACCGCAAATCACGTCATTGAGCAAAAAAGTTAGAAAGCTTATCCCAATTTTCAAATCTCTCCGAGATACTGCTGATGTGATCTTAGTCAAACGAATTTTCCTGCGATGTTTCGCGGAGTACCAAGCTGGACGAATTTTGTGGGATTTGGTTGATCTTTATGGGCGAACAGCATCTATGACGGCATGCAGAGTATGCTTGACACATCATAGCCGTATGTATTCAATATTGAGTGGGCCACTTCAAGAGATTTATGAAAATATCACTGATGTTCCGCTTGTAATGGGTGACATATGGCCGACTTGCGTATGTTACATTTGCTACCATATGATTAGAAAATTCCACAAGTTTATAGATAAATCATTAAAGGCAAATGAGCTCCTGTTGCAACTCATCAATTCCGAGTCTGTGGCCACTGTAGACACTCTGAATATGATTGTGAAGCAACAACCTGATATCCCTTGGGATTTTTCCGCATCGCCAACGGAGAGTATTATGGTTTTAGACCCAGAAGAGGTTAAGCTGGAGTCTACTTTCAATATTGAGAAAGTAAAGTCTGAATCGGATTTCGAGGAATCGCAAGATGAAAATGAAACAGGAGCAGACCTGATCAATGAACAGGACAAAGAAATGCAACTTGATTCTCCAACAGCGTCAACAACAACCGAAGAAACCACAGAAACAGGAAACGATGCCCAAAATATTGATGTCAAGATAATTACAGAATACAAAAATTACGACAGTCTCAGTAAACCAACAATTTTTACAAAAAGTAGTGACGATAATAATGCGAAACCTTATAAATGTAACGTCTGTGCTAAAAGATTTACTAAAAGTAATGATTTGTCCAAACATCAAAGAATTCATACGGGAGAGAAACCTTATAAATGCAACGTCTGCGATAAAAGATTTACTGTAAGTGGTAATTTATCCACACATCAAAGAATTCATACGGGAGAGAAACCTTATAAATGTAACGTCTGTGCTAAAAGATTTACTAAAAGTAATGATTTGTCCAAACATCAAAAAATTCATACGGGAGAGAAACCTTATAAATGCAACGTCTGCGATAAAAGATTTACTGAAATTGGTAATTTATTCACACATCAAAGAATTCATACGGGAGAGAAACCTTATAAATGTAACGTCTGCGATAAGAGATTTACTGAAAGTGGTAAATTATCCACACATCAAAGAATTCATACGGGAGAGAAACCTTATAAATGTAACGTCTGCGATAAAAGATTTACTCAAACTAGTCATTTACATAGTCATCAAAGGATTCACACGGGAGAGAAACCTTATAAATGTAACGTCTGCGATAAAAGATTTACTGAAAAAAGTAATTTACATAGTCATCAAAGAATTCACACGGGAGAGAAACCTTATAAATGTAACGTCTGCGATAAGAGATTTACTACAAGTAGTAGTTTATCCACACATAAAAGAATTCACACGGGAGAGAAACCTTATAAATGTAACGTCTGCGATAAAAGATTTACTGATGGTAGAAATTTATCCAGACATAAAATTATTCACACGGGAGAGAAACCTTATAAAAGTACCTAG
Protein Sequence
MHITQHNCAYYKQNNSDRYSVSVASRLIQHLSEVGPNLSQSQFGFRVRRSTIDALTGLRELVEDATSRGERVLAVSLDIANAFNSLPFRTILEALRYHRVPQYLMRVLSSYLEGRDVVFTDQSGVADRHPMSRGVPQGSVLGPLLWNVSYDWVLRAALPPRVKLFCYADDTLVTARGGDLEQTLSLASAYTTLVVRRIEALGFKVALHKTEALLFHGPRRGAPPGHEIIVAGVKVPLKRHMKYLGLVIDGRWGFDEHFRRLEPRLLSAADALARLLPNVGGPSARVRRLYAGIVRSMALYGAPVWADALSSRAIASLHRAQRALALRAIRAYSSVSHTAACIIAGTPPWEISAHVLAAAYRVRTDAQDNDRRLAPRERASALEEAKIEAFRTWFEELVEQRGSASVSGTLSRTLEAMQAFLTTWADRRHGSLSYHLVQVLSGHGSFGRYLHRIGREPTPECHHCDAAEDTAQHTLEVCPGFSQRRQELTAIIGEDLSLRNVVCVMLEGEEMWDAVNSFCVDVMTQKEDAERAREEDPEATPCRRRRLGPAYFLLTVTSGVQAREARALHCTGCRQSLIPWMPLGITGPPFLGGSVGQRNIYVSCRVDAQTSVCLTHNKCMKPMRHDTSRRTLGTELANEILKKNNTSEHQLALRKNKLTVSNSMTLLPTDYIEIDKIIGNLKVHSAPGIDNISNIVLKNSRQILCSMIAHLCNLSISTGIFPKIFKQAVIVPIHKSGDKESASNYRPISLLSTISKIIEKVVNMRLMSYLESQKLLAENQYGFRNNKSTEDAVALLSTKVSKLLDKGQCCIGVFLDLKKAFDTVSIPILLASMESLGIRGIVLEWFRDYLTDRGQSIRINDFHRDSLHTNFGIPQGSTIGPSLFLIYVNELCKIQLKNGCTLAFADDTTLIFWGQTWSQVQRHAEIGFKVIMKWLDDNLLTLNITKTKYICFRVSSKTDPPPQFNIKVHKRNCNDGLSINSFGGCDCTTLEQTLTHKYLGIIFDKNLSWQPQITSLSKKVRKLIPIFKSLRDTADVILVKRIFLRCFAEYQAGRILWDLVDLYGRTASMTACRVCLTHHSRMYSILSGPLQEIYENITDVPLVMGDIWPTCVCYICYHMIRKFHKFIDKSLKANELLLQLINSESVATVDTLNMIVKQQPDIPWDFSASPTESIMVLDPEEVKLESTFNIEKVKSESDFEESQDENETGADLINEQDKEMQLDSPTASTTTEETTETGNDAQNIDVKIITEYKNYDSLSKPTIFTKSSDDNNAKPYKCNVCAKRFTKSNDLSKHQRIHTGEKPYKCNVCDKRFTVSGNLSTHQRIHTGEKPYKCNVCAKRFTKSNDLSKHQKIHTGEKPYKCNVCDKRFTEIGNLFTHQRIHTGEKPYKCNVCDKRFTESGKLSTHQRIHTGEKPYKCNVCDKRFTQTSHLHSHQRIHTGEKPYKCNVCDKRFTEKSNLHSHQRIHTGEKPYKCNVCDKRFTTSSSLSTHKRIHTGEKPYKCNVCDKRFTDGRNLSRHKIIHTGEKPYKST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-