Basic Information

Insect: Chilo suppressalis
Gene Symbol: -
Assembly: None
Location: chr18:11441632-11470844[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 5.9e-05 0.0034 17.5 0.1 3 23 132 152 131 152 0.97

2 14 5.3e-07 3.1e-05 23.9 1.2 1 23 158 180 158 180 0.99

3 14 3.3e-06 0.00019 21.4 2.7 1 23 186 208 186 208 0.99

4 14 3e-05 0.0018 18.4 3.1 1 23 223 245 223 245 0.98

5 14 2.1e-07 1.2e-05 25.2 1.5 1 23 260 282 260 282 0.99

6 14 9.4e-05 0.0054 16.9 2.8 1 23 288 310 288 310 0.98

7 14 6.6e-06 0.00038 20.5 2.1 1 23 316 338 316 338 0.99

8 14 0.021 1.2 9.4 1.8 1 23 345 367 345 367 0.98

9 14 3.6e-07 2.1e-05 24.5 2.3 1 23 373 395 373 395 0.99

10 14 0.025 1.4 9.2 1.8 1 23 402 424 402 424 0.98

11 14 1.5e-06 8.5e-05 22.5 1.5 1 23 430 452 430 452 0.99

12 14 0.0012 0.068 13.4 0.3 1 20 458 477 458 480 0.93

13 14 2.3e-05 0.0013 18.8 1.4 2 23 487 508 486 508 0.96

14 14 2.1e-06 0.00012 22.1 1.4 1 23 514 537 514 537 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	5.9e-05	0.0034	17.5	0.1	3	23	132	152	131	152	0.97
2	14	5.3e-07	3.1e-05	23.9	1.2	1	23	158	180	158	180	0.99
3	14	3.3e-06	0.00019	21.4	2.7	1	23	186	208	186	208	0.99
4	14	3e-05	0.0018	18.4	3.1	1	23	223	245	223	245	0.98
5	14	2.1e-07	1.2e-05	25.2	1.5	1	23	260	282	260	282	0.99
6	14	9.4e-05	0.0054	16.9	2.8	1	23	288	310	288	310	0.98
7	14	6.6e-06	0.00038	20.5	2.1	1	23	316	338	316	338	0.99
8	14	0.021	1.2	9.4	1.8	1	23	345	367	345	367	0.98
9	14	3.6e-07	2.1e-05	24.5	2.3	1	23	373	395	373	395	0.99
10	14	0.025	1.4	9.2	1.8	1	23	402	424	402	424	0.98
11	14	1.5e-06	8.5e-05	22.5	1.5	1	23	430	452	430	452	0.99
12	14	0.0012	0.068	13.4	0.3	1	20	458	477	458	480	0.93
13	14	2.3e-05	0.0013	18.8	1.4	2	23	487	508	486	508	0.96
14	14	2.1e-06	0.00012	22.1	1.4	1	23	514	537	514	537	0.97

Sequence Information

Coding Sequence: ATGTTCGAGCAGCAGATCAAGGCTGAACCTATGAGCTTCTACACATCTCATCCTCATGTACACTCCGGTCCCCCTACAATAGTCCGATCTGATAGTCATCCAATAATCAACATGAACCAGCATCACCAATCACACCAGGAGGACTCTAAAGACAGCTTGATCATACAACAGCAAGTACAACACCAGCAAGAATTAATGGAACAGCACCAACAACAAGAATTACAACAGCAAGATGACGAGTTAAGTTTCAAAGGAATGGATGATGAAGGTGTTGAAATGGAAATGGACAGCCGACAATGTTCTCAGGGTATGGGAGTTGATATGGGATCAGTTCAAACTAAAATGGAAGTAACAAATGGAGGCCACTCAACCCCTAGATCGAAACCACAAGCTTGCAAGGTATGCGGTAAAGTGTTGTCGTCTGCATCGTCATACTATGTCCACATGAAGCTGCACTCTGGAAATAAGCCCTTTCAGTGTACTGTTTGCGACGCGGCCTTTTGCCGTAAGCCATACCTGGAGGTGCACATGCGCACGCACACGGGCGAGCGGCCCTTTCAATGCGACCTCTGCCTCAAACGATTCACGCAGAAATCCAGTCTCAACACGCACAAACGTGTCCACACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGCCGACATGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGGTTCACTCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACTGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTGAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAGCGGACGCACACAGTCCAGGGGAGGCCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACGCACACCGGCGAGCGTCCGTATCAGTGCGACATCTGCCTGAAGCGCTTCACACAGAAATCCAGTCTCAACATTCACAAGCGGACGCACTCAGTGCAGGGCCGGCCCTTCCAGTGTCTGCAGTGCCCCGCCGCCTTCACCTGCAAGCAGTACCTCGAGATCCACAACCGCACGCACACCGGCGAGCGACCATACCAATGTGACGTCTGCCTCAAGAGATTCGCTCAAAAATCAACACTCAACATACACAAACGAACGCACACAGGTGAACGACCTTATGCTTGTGATATTTGTCAAAAGAGGTTTGCTGTAAAGAGCTACGTTACGGCGCACAGATGGTCTCACGTGGCCGATAAGCCTTTAAACTGCGACCGTTGCTCGATGACGTTCACATCAAAGTCCCAGTTCGCGCTCCACATCCGCACGCACTCGGCGGGCCCGTGCTACGAGTGCAGCGTGTGCGGACGCACCTTCGTCAGAGATAGCTATCTAATAAGGCATCACAACCGCGTGCACCGCGAAAACCACAGCAACGTGTCAGCGAACAGCATCGGCACCATTAACAGCGTCGCCACCAACGCCAACAACTCCAACAATGGCAACTACGACTCTCCCGGCGTTTGCGACTTGAGCTTTGTCCCAATGGTGAATCGCTACATGACGTCACAGGGTACGCAAGTTTCAATGCAAGATACACAGAGCAAAATGTCAGCCCTGTCGCCGCAATCTATAGCGTCAATATCTTCACCTCCTCCCCCGCACACGCCTACCCCGCAGCCCATGTCTGGTCAAATGCATCTAGGAGACTGA
Protein Sequence: MFEQQIKAEPMSFYTSHPHVHSGPPTIVRSDSHPIINMNQHHQSHQEDSKDSLIIQQQVQHQQELMEQHQQQELQQQDDELSFKGMDDEGVEMEMDSRQCSQGMGVDMGSVQTKMEVTNGGHSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHSAGPCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNANNSNNGNYDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTQSKMSALSPQSIASISSPPPPHTPTPQPMSGQMHLGD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00784581;
90% Identity: -
80% Identity: -