Csup000070.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chilo suppressalis
Gene Symbol
-
Assembly
None
Location
chr27:10420599-10452488[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.023 1.3 9.4 2.0 5 23 218 236 215 236 0.96
2 17 2.2e-07 1.3e-05 25.1 3.2 1 23 242 264 242 264 0.99
3 17 2.5e-07 1.4e-05 25.0 2.0 1 23 270 292 270 292 0.99
4 17 3e-08 1.7e-06 27.8 2.6 1 23 298 320 298 320 0.99
5 17 1.4e-06 8.2e-05 22.6 3.6 1 23 326 348 326 348 0.99
6 17 2.1e-08 1.2e-06 28.4 2.7 1 23 354 376 354 376 0.99
7 17 2.1e-09 1.2e-07 31.5 2.7 1 23 382 404 382 404 0.99
8 17 2.7e-07 1.6e-05 24.8 2.4 1 23 410 432 410 432 0.98
9 17 1.8e-07 1.1e-05 25.4 3.1 1 23 438 460 438 460 0.99
10 17 1.2e-07 7e-06 25.9 1.8 1 23 484 506 484 506 0.99
11 17 2.1e-06 0.00012 22.1 2.2 1 23 512 534 512 534 0.99
12 17 4e-05 0.0023 18.0 0.9 1 23 540 562 540 562 0.98
13 17 9.1e-08 5.3e-06 26.3 1.8 1 23 568 590 568 590 0.99
14 17 1.2e-06 6.8e-05 22.8 2.1 1 23 596 618 596 618 0.98
15 17 2.9e-08 1.7e-06 27.9 2.7 1 23 624 646 624 646 0.99
16 17 0.13 7.4 7.0 0.7 2 23 653 674 652 674 0.85
17 17 0.062 3.6 8.0 1.5 1 11 680 690 680 690 0.95

Sequence Information

Coding Sequence
ATGTCTCGTTTACAAGCATGCCGAGTATGCTTGACACATCATAGCCGTATGTATTCAATATTGAATGGGCCACTTCAAGAGATTTATGAAAATATCACTGATGTTCCGCTTGTAATGGGTGACATATGGCCGACTTGCGTATGTTACATTTGCTACCATATGATTAGAAAACTCCACAAGTTTATAGATAAATCATTAAAGGCAAACGAGCTCCTGTTGCAACTCATCAGTTCCGAGTCTGTGGTCACCACAGACACACTAAATATGATTGTGAAGCGACAACCTGATATCGCCTGGAACTATAGTGTGTCACCGATGGAGAGTATAATGCTTATAGATCCAGAAGAGGTTAATCTGGAGGTTACTCTCAAGGTTGAGAAAGTGAAGTCTGAATCGGACTTAGAGGAGATGCAGGATCAAAGTGAAACAGGAGCAGACCTGATCAATGAACAGGACAAGGAAATCCAAGTTGATTCTCCAACAGCGTCAACAACAACCGAAGAAACCACAGAAACAGGAAACGATGCCCAAAATATTGATGTCAAGAGAATTACAGAATACAAAAATAACGACAGTCTTTGTAAACCAAATATTTTCACAAAATATAGTTACGAAAACAAAAATATGGTGAAGAACAAACATGATAAAATAATATGTGATAAAAAAATTACTAAAAGTAGCCATTTCTACAAACATCGAAGAAATCACACGGGAAAGAAACCTTATAAATGTAACGTCTGCGATAAAAAATTTACTGAAAGTGGTCATTTAAACAGACATCAAAAAATTCACACGGGAGAGAAACCTTATAAATGTAACATCTGTGATAAAAGATTTACTCTAAATTATAATTTAGCCAAACATAAAAGAATTCACACGGGAGAGAAACCTTATAAATGTAACGTCTGCGACAAAAGATTTACTCAAAACAGTAAGTTAGCCACACATCAAAGAACTCACACGGGAGAGAAACCTTATAAATGTAACGTCTGTGATAAAAGATTTACTAAAAGGAGTTATTTATCCACACATAAAAGAATTCACACGGGGGAAAAACCTTATAAATGTAACATCTGCGATAAAAGATTTACTCAAAATAGTAGTTTATTCACACATCAAAGAATTCACAGTGGAGAGAAACCTTATAAATGTAACGTCTGTGGTAAAAGATTTACTACAAGTAGTAATTTATTCAAACATCAAAGAATTCACACGGGTGAGAAACCTTATAAATGTAATGTCTGCGATAAAAGATTTACTCAAAATAGTAGTTTATTCACACATCAAACAATTCACACGGGAGAGAAACCTTATAAATGTAACGTCTGCGATAAAAGATTTACTGAAAGTGGTCATTTAAACAGACATCAAAAAATTCACACGGGAGAGAAACCTTATAGATGTAACGTCTGCGCCAAACATAAAAGAATTCACACGGGAGAGAAACCTTATAAATGTAACGTCTGCGATAAAAGATTTACTCTAAACAGTAGTTTAGCCACACATCAAAGAACTCACACAGGAGAGAAACTTTATAAATGTAACGTCTGCGATAAAAAATTTACTGAAAGTGGTACTTTATCCACACATAAAAGAACTCACACAGGAGAGAAACCTTATAAATGTAACGCCTGCGATAACAGATTTACTACAAGTGGTAATTTATCCAGACATAAAATTATTCACACGGAAGAGAAACCTTATAAATGTAACGTCTGCGATAAAAGATTTACTCAAAAAAGTGATTTATCCATACATAAAAGAATTCACACGGGAGAGAAACCTTATAAATGTAATGTCTGCGATAAAAGATTTATTACAAGTGGTCATTTATCCAGACATAAAATTATTCACATGGAAGAGAAACCTTATAAATGTAACTTCTGCGATAAAAGATTTACTCAAAAAAGTGATTTAACCATACATCAAAGAATTCACACGGGAGAGAAACCTTATAAATGTAACGTCTTCGATAAAAGATTTACTCAAACTATTACTTTATATAGTCATCAAAGGATTCACACGGGAGAGAAACCTTATAAATGTAACGTCTGCGATAAAAGATTTACTTAA
Protein Sequence
MSRLQACRVCLTHHSRMYSILNGPLQEIYENITDVPLVMGDIWPTCVCYICYHMIRKLHKFIDKSLKANELLLQLISSESVVTTDTLNMIVKRQPDIAWNYSVSPMESIMLIDPEEVNLEVTLKVEKVKSESDLEEMQDQSETGADLINEQDKEIQVDSPTASTTTEETTETGNDAQNIDVKRITEYKNNDSLCKPNIFTKYSYENKNMVKNKHDKIICDKKITKSSHFYKHRRNHTGKKPYKCNVCDKKFTESGHLNRHQKIHTGEKPYKCNICDKRFTLNYNLAKHKRIHTGEKPYKCNVCDKRFTQNSKLATHQRTHTGEKPYKCNVCDKRFTKRSYLSTHKRIHTGEKPYKCNICDKRFTQNSSLFTHQRIHSGEKPYKCNVCGKRFTTSSNLFKHQRIHTGEKPYKCNVCDKRFTQNSSLFTHQTIHTGEKPYKCNVCDKRFTESGHLNRHQKIHTGEKPYRCNVCAKHKRIHTGEKPYKCNVCDKRFTLNSSLATHQRTHTGEKLYKCNVCDKKFTESGTLSTHKRTHTGEKPYKCNACDNRFTTSGNLSRHKIIHTEEKPYKCNVCDKRFTQKSDLSIHKRIHTGEKPYKCNVCDKRFITSGHLSRHKIIHMEEKPYKCNFCDKRFTQKSDLTIHQRIHTGEKPYKCNVFDKRFTQTITLYSHQRIHTGEKPYKCNVCDKRFT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-