Csup013799.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chilo suppressalis
Gene Symbol
-
Assembly
None
Location
chr5:23174448-23185591[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 6.6e-09 3.8e-07 29.9 1.5 1 23 179 201 179 201 0.98
2 18 4.3e-07 2.5e-05 24.2 2.5 1 23 207 229 207 229 0.99
3 18 4.4e-07 2.6e-05 24.2 0.6 1 23 235 257 235 257 0.99
4 18 8.2e-09 4.7e-07 29.6 2.8 1 23 263 285 263 285 0.99
5 18 2.7e-05 0.0015 18.6 1.0 1 23 291 313 291 313 0.99
6 18 7.7e-06 0.00044 20.3 1.7 1 23 319 341 319 341 0.99
7 18 1.8e-07 1e-05 25.4 0.7 1 23 347 369 347 369 0.99
8 18 5.5e-06 0.00032 20.7 1.0 1 23 375 397 375 397 0.99
9 18 2.9e-07 1.7e-05 24.8 4.8 1 23 403 425 403 425 0.99
10 18 1.8e-05 0.001 19.1 4.1 1 23 431 453 431 453 0.98
11 18 1.4e-05 0.0008 19.5 0.8 1 23 459 481 459 481 0.98
12 18 3.4e-05 0.0019 18.3 4.3 1 23 487 509 487 509 0.98
13 18 7.6e-07 4.4e-05 23.4 0.7 1 23 515 537 515 537 0.98
14 18 1.9e-08 1.1e-06 28.4 1.8 1 23 543 565 543 565 0.98
15 18 6.7e-09 3.9e-07 29.9 2.1 1 23 571 593 571 593 0.99
16 18 1.6e-07 9e-06 25.6 2.6 1 23 599 621 599 621 0.99
17 18 1.4e-07 8e-06 25.8 0.4 1 23 627 649 627 649 0.99
18 18 6.8e-07 3.9e-05 23.6 0.7 1 23 655 677 655 677 0.98

Sequence Information

Coding Sequence
ATGTTGAGGAGATGCAAGATCAAAATGAAACAGGTAATATTTTCAGAAGCAAAACTGCCCGAAAAACTTAAGCCGACCAGTGAAATCAAGAAAAACCAAGTCAAGTCTCCAACAGCATCAACAGCAACCGAAGTAAACACGGGAACAGAAAACGAAGCTCAAATTGGCGATCCAAATAGAATTACAGAATTCAAAAATAGGGGCAGTGTCTTTAAACCAAATTTTTTCTTCAAATATAGTTACGAAAACGACGACGTTGTAAAGGACAAACACAACAAAGTCAAAAATCACAAAAAGACTTTGATATGTGATGTTTGTAAAAATATTTTGTTTTGTAAAACCGAGTTAGAAAGTCATGTAACTAAATCACATTCTGAAAGTAATCCCATAACTAACCAGAATAATACTAAGACAAATGAAATAAACTTAAATGATAAATACAAATTAGAGAACAATTTAGGTACTGCAACGACAAGCAACGGTGAGCATTCGCTACATAAACTCGATAGGAAGACTGACCTGAAAGATAGACCGTATAACTGTAGTATATGTGGTAAAAGATTTACTAGAAGTAGTGATTTATCCCGACATCAAAGAATTCACACGGGAGATAAACCTTATAAATGTAACATCTGTGATAAAAAATTTACTGAAAGCAGAACTTTATCCAAACATCAAAGGATTCACATGGGAGAGAAACCTTATAAATGTAATGTATGCGATAAAAGATTTGCTGTAAGTGATAGTTTATCCACACATCAAAGAATTCACACGGGCGAAAAACCTTATAAATGTAAGGTCTGCAATAAAAGTTTTTCTCGAAGTAGTAATCTATCCACGCATCAAAGAATTCACACAGGAGAGAAACCTTATAAATGTAACATCTGCGATAAAAGATTTATTCAAGGGAGTATCTTAACCAGACATAAACGGATTCACACAGGAGAGAAACCTTATAAATGTAACGTCTGCGATAAAAGATTTACTCACGTGAGTAGCATAACCGCACATGAAAGGATTCACACAGGAGAGAAACCTTATAAATGTAACGTCTGCGATAAAAGATTTACTCAAGTGAGTAGCTTAACCGCACATGAAAGGATTCACACAGGAGAGAAACCTTATAAATGTAACGTCTGCGATAAAAGATTTACTGCAAGTGGTAGATTATCCAACCATCAAAGAATTCATACGGGAGAGAAACCTTATAAATGTAATATCTGTGATAAAAGATTTAATAGAAGTAGTCATTTATCCACACATAAAAGAATTCACACGGGAGAGAAACCTTATAAATGTAATGTCTGCGATAAAAGATTTACTTTAAGTTATCATTTATCCACACATAACAGAATTCATATGGGAGAGAGACCTTATAAATGTATTATCTGTGATAAAAGATTAACTAGTAGTAGTGATTTATCCAGACATCAAAGGATTCACACAGGAGAGAAACCTTATAAATGTAATGTCTGCGATAAAAGATTTACTTTAAGTAATCATTTATTCACACATAACAGAATTCATATGGGAGAGAGACCTTATAAATGTATTATCTGTGATAAAATATTTACTAGTAGTAGTGATTTATCCAGACATCAAAGGATTCACACGGGAGAGAAACCTTATAATTGTAATGTCTGCGATAAAAGATTTACTAGAAGTAGTGATTTATCCAGACATCAAAGGATTCACACGGGAGAGAAACCTTACAAATGTGACGTCTGTGATAAAAGATTTACTCAAAACTCTAATTTATCTAAACATCAAAGAATTCACATGGGAGATAAACCTTATAAATGTAACATCTGCAATAAAAAATTTGCTAAAAGCAGTACTTTATCCAAACATCAAAGGATTCACACCGGAGAGAAACCTTATGTATGTAATGTCTGTGATAAAACATTTAATGATATTGGCAATTTATCCAAACATCAAAGAATTCACACTGGAGAGAAACCTTATTCATGTAATGTCTGTAATAAAAGATTTACTGATATTGGTAATTTATCCTCGCATCAAAGAATTCACACGGGAGAGAAACCTTAA
Protein Sequence
MLRRCKIKMKQVIFSEAKLPEKLKPTSEIKKNQVKSPTASTATEVNTGTENEAQIGDPNRITEFKNRGSVFKPNFFFKYSYENDDVVKDKHNKVKNHKKTLICDVCKNILFCKTELESHVTKSHSESNPITNQNNTKTNEINLNDKYKLENNLGTATTSNGEHSLHKLDRKTDLKDRPYNCSICGKRFTRSSDLSRHQRIHTGDKPYKCNICDKKFTESRTLSKHQRIHMGEKPYKCNVCDKRFAVSDSLSTHQRIHTGEKPYKCKVCNKSFSRSSNLSTHQRIHTGEKPYKCNICDKRFIQGSILTRHKRIHTGEKPYKCNVCDKRFTHVSSITAHERIHTGEKPYKCNVCDKRFTQVSSLTAHERIHTGEKPYKCNVCDKRFTASGRLSNHQRIHTGEKPYKCNICDKRFNRSSHLSTHKRIHTGEKPYKCNVCDKRFTLSYHLSTHNRIHMGERPYKCIICDKRLTSSSDLSRHQRIHTGEKPYKCNVCDKRFTLSNHLFTHNRIHMGERPYKCIICDKIFTSSSDLSRHQRIHTGEKPYNCNVCDKRFTRSSDLSRHQRIHTGEKPYKCDVCDKRFTQNSNLSKHQRIHMGDKPYKCNICNKKFAKSSTLSKHQRIHTGEKPYVCNVCDKTFNDIGNLSKHQRIHTGEKPYSCNVCNKRFTDIGNLSSHQRIHTGEKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-