Csup011511.1
Basic Information
- Insect
- Chilo suppressalis
- Gene Symbol
- -
- Assembly
- None
- Location
- chr26:5130789-5139556[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.5e-08 3.3e-05 23.2 0.0 2 32 196 226 195 230 0.94
Sequence Information
- Coding Sequence
- ATGGAATCCTCATCTAAAAGTGATATTTCTACATTTTACGGTCAATGTAGATGTTGCCTAGAATATGGTTATATGAAGAATTTATGGACTGAACATAATTCTGAAGGCATACGCGAAGTGTTTGGAGAAATGTTGCTGGAAACATTTTCTATTAACTGGGAGACAGTGGATGAATTGAAGGACTATATTTGTGAATCGTGTGTGATCCGCCTCAGGGATGCTTATGAATTCAAAAAGGAGGTGCTCTCATCCCAGCAGCTTATAAGTGAGGGTTCGTACGACTTTGAACAAGACTCCGATTATAAAGTTGAAATGTTGGAAGAGTCAGACGAATTAGAAAATGCAGACGAGTCGGAAGAAGTCTCTATGGAGGAAGAGCAAAACGACATAGAGGTGAAAACTGATTTGAACGACACTGAATACTTTGAAGTGGAATACTTAGAGGATGATGAGACTGTGGAAGTTAAAGATGAAACTTTAAAACAAACTGATACCAAATCCGACATGGAAACTGACAAACCCAAAACCAAATGGCCGCGGAAGAAGAAACCCAATGAAATCGTAAAACAGTACAAGGACTATTCGGAAGAGGATATGAGACAGTGTTTGGAGTTAGTGAGGAGTAACAAGATGAGCATATCAGATGCGAGTAAGCTCTATGGTATACCAAGGAAGACTGTGGCCGGCAAAATTAGCTATGTCCAGAAAAAGAAATTGGATGCGTCGTGGATAGAGGAAGATATGCTGAAGAGAAGGCATTTGATCCCAGAAGTGAAGAAACACAGGCACAACATCCGTGTAGTGTTGGAAAACTCGAACGCTACGCCGTTCAGAAGTCAGGCTGGCACGGAGTTCACGTGCAATTATTGCGCAAAGGCGTACAGCCAACCGCACGACTTGAAAAGGCATACTTTATTGCGGCACAGGGATGTCACCAAAGTGTCGGAAGTGAAAGTCGCCACCGGATATAGCATCAAAATGGACGTGACCAATCTCAAATGCCGGCTGTGTAGAGAGAAGTTTGATTTACTCGAAGATCTGATGAGCCACTTGTCACAGAAACACGACTTCTTAATTCACAAAGACGTGACCACGCAAATGGTTCCGTTCAAATTTGACGGCGACAAACTGAAGTGTGCCGTGTGCTCTATGACCTTTAACTTCTTCAAATCGTTAGCGGAGCATATGAGCTTGCATTACAGCAACTTTGAATGCGAATTGTGCGGTGCTGTGTTCATTACCAAGCAAAGGTACAAAGTGCACGAAGCCAGACAGCATTCTAACAAAGGCAGAGTTTACTATTGCAGTTTCTGCCCTAAAAGTTTCGCTAACCAAATGAAAACGCGCGACCACGAAAGAGTGATACACATCAACGAGAATAGGACTAAAAAGTGCGGTTATTGCAAGGAAAAGTTTAGGACTGTTGAGGAGAAATTGAACCACGAGCGCTCCGTACACGGTGGCACTTGTAGATTGTTCAAGTGTTGCGACTGCGGTCAATATTTTGAAACCCATGTGGCTTTAAACGCTCACGCCAAGAAGTTGCATAGTATAGCGAAACCTTTTAAATGCGAGATATGCGGTCTGCTGTTTTACAGACAACCTTCTTTGACGTTGCACATGGCGAAGAAGCATGCCGATGTTGATGTTGATAAATAA
- Protein Sequence
- MESSSKSDISTFYGQCRCCLEYGYMKNLWTEHNSEGIREVFGEMLLETFSINWETVDELKDYICESCVIRLRDAYEFKKEVLSSQQLISEGSYDFEQDSDYKVEMLEESDELENADESEEVSMEEEQNDIEVKTDLNDTEYFEVEYLEDDETVEVKDETLKQTDTKSDMETDKPKTKWPRKKKPNEIVKQYKDYSEEDMRQCLELVRSNKMSISDASKLYGIPRKTVAGKISYVQKKKLDASWIEEDMLKRRHLIPEVKKHRHNIRVVLENSNATPFRSQAGTEFTCNYCAKAYSQPHDLKRHTLLRHRDVTKVSEVKVATGYSIKMDVTNLKCRLCREKFDLLEDLMSHLSQKHDFLIHKDVTTQMVPFKFDGDKLKCAVCSMTFNFFKSLAEHMSLHYSNFECELCGAVFITKQRYKVHEARQHSNKGRVYYCSFCPKSFANQMKTRDHERVIHINENRTKKCGYCKEKFRTVEEKLNHERSVHGGTCRLFKCCDCGQYFETHVALNAHAKKLHSIAKPFKCEICGLLFYRQPSLTLHMAKKHADVDVDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00319260;
- 90% Identity
- iTF_00319260;
- 80% Identity
- iTF_00319260;