Basic Information

Gene Symbol
-
Assembly
None
Location
chr6:13194085-13195367[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.9e-08 2.2e-05 23.8 0.0 1 35 8 42 8 49 0.86

Sequence Information

Coding Sequence
ATGGCTCCGAGAAAAAAATATTCTCACGAGCAGTTAGAAAAAGCTGTAGAAGCTGTTAAAAATGGCGAAAAGATTGCAGTTGCTGCGAAACGTTTCGGAGTACCTAGGATTACGCTCCATGATAAAATTTGGGGAAAAACAACAATGGGTTGCACTATGGGGCCGAGCACAGTTTTAACTAAAGGGGAGGAAGATATTTTGGAAAAGTGCATATTAGCTTTATATGAAAGACATATTCCATTGACAAAAGATTCTCTATTAGACAGTGTGCAAAAAATAATAATTGATCAAAACAGACCACAGAGAGATTCAGAGAAAGACAGAAACAGAGAGATCAACTGA
Protein Sequence
MAPRKKYSHEQLEKAVEAVKNGEKIAVAAKRFGVPRITLHDKIWGKTTMGCTMGPSTVLTKGEEDILEKCILALYERHIPLTKDSLLDSVQKIIIDQNRPQRDSEKDRNREIN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00985988;
90% Identity
iTF_01209190; iTF_01264500;
80% Identity
-