Csup000099.1
Basic Information
- Insect
- Chilo suppressalis
- Gene Symbol
- -
- Assembly
- None
- Location
- chr27:11830766-11839301[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.9 4.3e+03 -2.8 0.1 7 21 92 105 91 105 0.83 2 2 9.1e-12 6.7e-09 35.0 0.0 1 37 115 151 115 158 0.91
Sequence Information
- Coding Sequence
- ATGCACCAGTGGGTAGGAGCAACAAAGGTGAAAGTAAAGAAAAAGAAGTTGCCACTGAGATCCAACAAGAAAAAGGAAGAAGATACAAAGAAGACACCAGAAGTTCCAATGGAGTCGTTAAATAACGAGGCCAGTAGTGACTGTGATAACGACGAAGCGTTCGCTGAGAATAACGTAGCACAGAACGAGGAAGAATACAATGTGAATAATATAGAAGAGAATGGAGAAGAGTATAATGTGATTAACAGTAATACAGAATGTACGGCTCAAAGGAAAGCTGTTGCAGTAGTGATTTCAAAAATGTCGGAGTCAAAACCTAGAAAACGAAGAGGTAGTACATGGGATGAAGACAGTTTGAGACGTGCCATGGAAGCAGTACAAAACAATAAGCTTAGTACAAATGCTGCAGCGTTAAAGTACAATATTCCAAGACGCACCCTCAGAAACCATTTACTAAGCGGTAATCGCACTAAAATTATTGGGAAGACCACTGTTCTCACAAAACAATTAGAAGAAGATTTTACGCAGCGAATCAAACGTTTTGGAAAAGTTGGTGTAACACTTACGCCTAAATTTATCAGGAAACAAGCCTTTCTATTTTGTGAGGGATTTAAAATCAAGCATTCTTTCAATATGTCAACTAGAATGGCCGGACATAAATGGCTCAAAATGTTTTTGTCTAGAAACCCATCAATATTAAAAACAAAAGCCCAGCTAATGAATCCAGCTGGAGCTCAAAAAATTAATGATCCCATTGTGAAACACAATTTTGAAGAATTGAAGAAACTCTATGAAGCGCTAGACATAATTGCACATCCTGAACGCTTGTACAACATGCATGAAAAAGGGTGTCGCATTGCGTTCCACAAACAAAATGTAGTTTTGGCCGAAAAAGAAAAGGTTGTTGCTCCGGAACACGCCGATAACGTAACAATAGCGATGTGCATAAACGCTGTGGGTATTGCTATACCGCCCATGATTATCTTCAAAGGGGTTAGGCATAGATCAGAATTAGCAACGAATTTGCCACCTGGAACAAAAGTAAGCATGGCACCCGAAGGCAGCATGACCAGGAGCTTATTCGTAGAGTTCATTCAACATTTAGCACAACATAAAGTCCCCGATAAGTGTCTGCTTATCTTTGATGGAGCAAAGTGTCATTTATCATATGAGGCTCTTGAAGAAGCAGATAAAAATAATATAGAATTATACTGCTTACCTGCAAACACAACGCAAGGACTAAATCGGTCCTTCGAACATCACTGGGATGAAGAGGTTTCAAACTACCTGTGCAATTCTCAGGAGAGAATTTTAAACAAAGCTGCATTTAGCGAAATTTTCTCCCGAACATGGCTAAGGTGTATGACTCAAAACAATATTACGAATGCATTCAAAGCCACTGGTTTATACCCGCTCGATCCTGATGTAATACCCGAAGAAGCTTATGCTCCTTCGATTGTAACTGACAGATCTTTAACGTTAGAACACCAGATCGACCAACTACTTATATCTAAAGTGTCAGAATTGTCGTCTCAGTCTCTGTTAGATGAAAGGTCAGCTCATGTTTCTGACGTCTCTTCAATTTCTACGCCGACTTTCAAAGAGAAGATAGTATCGACATTTCCGAAATTTTCAAAACGAAAACCAGTTCTTGTTTCTTACAGTTCTTCAACTGATGCTTCAGACTTGGAATTCGATACAACGGTTAATGATCACATGATCACGAAACATGACCCCCAACCATCTCTGTACGATAATCCTTTTCCGAGTACGTCTAATGCTGAATCTGATCATGATTTGAATCCTAGTGAATCATTTAACAAAGATAGCTACATGACTAAACTTCATGTCCCAGATTTATACACTTCTCCGTCATTTGATGGTGATATCGAACAGAAAGGAGAAATCACTCCGAAAAAACTATTACTACAAAACAAAAGCTTAATTAAAGCAAAAGCTCAATTAGAGAGTCATGAGACCAGATCTTCGGATGACGACGAGCCGTTAATTAACTTAATGAAGGATAAAATGGAGCAAAGAAGAGTATAA
- Protein Sequence
- MHQWVGATKVKVKKKKLPLRSNKKKEEDTKKTPEVPMESLNNEASSDCDNDEAFAENNVAQNEEEYNVNNIEENGEEYNVINSNTECTAQRKAVAVVISKMSESKPRKRRGSTWDEDSLRRAMEAVQNNKLSTNAAALKYNIPRRTLRNHLLSGNRTKIIGKTTVLTKQLEEDFTQRIKRFGKVGVTLTPKFIRKQAFLFCEGFKIKHSFNMSTRMAGHKWLKMFLSRNPSILKTKAQLMNPAGAQKINDPIVKHNFEELKKLYEALDIIAHPERLYNMHEKGCRIAFHKQNVVLAEKEKVVAPEHADNVTIAMCINAVGIAIPPMIIFKGVRHRSELATNLPPGTKVSMAPEGSMTRSLFVEFIQHLAQHKVPDKCLLIFDGAKCHLSYEALEEADKNNIELYCLPANTTQGLNRSFEHHWDEEVSNYLCNSQERILNKAAFSEIFSRTWLRCMTQNNITNAFKATGLYPLDPDVIPEEAYAPSIVTDRSLTLEHQIDQLLISKVSELSSQSLLDERSAHVSDVSSISTPTFKEKIVSTFPKFSKRKPVLVSYSSSTDASDLEFDTTVNDHMITKHDPQPSLYDNPFPSTSNAESDHDLNPSESFNKDSYMTKLHVPDLYTSPSFDGDIEQKGEITPKKLLLQNKSLIKAKAQLESHETRSSDDDEPLINLMKDKMEQRRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -