Cleg014974.1
Basic Information
- Insect
- Chesias legatella
- Gene Symbol
- -
- Assembly
- GCA_947359385.1
- Location
- OX375792.1:2456125-2465663[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.41 23 5.7 0.2 1 20 199 218 199 222 0.93 2 11 0.0025 0.14 12.7 5.1 1 23 229 251 229 251 0.98 3 11 0.026 1.5 9.5 1.2 1 23 255 277 255 277 0.98 4 11 0.00015 0.0084 16.6 0.3 1 23 309 331 309 331 0.98 5 11 0.0051 0.29 11.7 1.5 3 22 343 362 342 366 0.89 6 11 0.00094 0.053 14.0 1.7 1 23 404 426 404 426 0.98 7 11 0.028 1.6 9.4 0.5 3 22 436 455 434 459 0.88 8 11 6.3e-06 0.00036 20.9 0.4 1 23 467 490 467 490 0.92 9 11 0.00065 0.037 14.5 6.6 1 23 496 519 496 519 0.96 10 11 3.6e-05 0.002 18.5 0.5 3 23 528 549 526 549 0.91 11 11 0.011 0.64 10.6 2.8 1 23 555 578 555 578 0.98
Sequence Information
- Coding Sequence
- ATGGAGACTGAAAAGAGTAATTTGTGCTGCGGTTGTCTTGCAGGTGACCGTAAAATGCACCTTATACAAAATTTGAAGGAGCAGTGTTTTTTGCAAATTATCAAAGAAATAACTATAACTTTACCGAGTGCGCTGTCTCTCTGGCTATGTTGGGAATGTGAAGCATACATCACAAGATTCACTAAATTCAAGCTACAAGTAAAACATTCATATCAAATTCTGCGTGAATTTTCCAAACAGGCTGAATTCACAACAAACCACCAAAAATTCAGCGTCAACAGAGTGGTAGATATCACACTATCTCCCACCACAGATGAATCCGAATCTACCAACACAGCCATCAAAACTGAAAAAGAGGAACATCTAGCTACCACAATGCAAATAAAATATGAAACTGATTATTCAGAAGATGACGACAAACTCCTGATAGATATATGCAATGATTCTAAAATAAAGAAGACAAAATTGAAACGCAGAAGAAAAGTGAAAGTTAAGAAGGAACATAGCATATTTAGAGAGGTAGAGTTATCAGAGCAACAGATTGTAGATGAGAGGAACGATTTGGCTACGAAAGACGATTTTGTCAATGCAATGTTCCGATGTCAAATGTGTATTATGTCGTTCCCCAATGAAGATGATATGAAAGAACATGTTTGGAAGAAACATGATTTGCACGCATCTAAACATAAGTGCAGTATATGCCAATGCGCATTCAGCACGGAGGTGGCATTCAACTACCATCAGAAGCGACACACAAAGAGATATGAATGTCTGCTTTGCAACGTGAGGTGTGTCAACAAAGTCGCTGTGAGGAACCACTACTCAACACATTTCCATAGCTCAACATATGATTTCGGGCAAAAAGCAAATAAAAACACTGAAGCAAGAAATGAGAATCACAATGGCGCGATATCCGAAGAGAAGTTCCCATGCGAGTATTGTCCCAAAGTGTTCGGTTGGAAGACTTCGCTCCGGAAACACGTGGAGACGCACAGGATAGAGGCGGGGCAGAAGCGACGCCCCTACTGCGAGCCTTGCAGGTTATCATTTAAAACGACGTCCAATCTTCAGAAGCACGTTAAGACCAGTTCCAAGCATCAGATACAACttaaactcagAAAACTAAAAGAATCAAACCCGCAACCGGACACCATGAACGACGCACAGATAGCCGACATAAAGACAATAGTCAACAGACAAAGAGAGCTATACCCGTGCGAGCAGTGCGACAAGAAGTTCCAGTGGAGGGGGAACCTGCTGCGACATCTGCACAGCCACGCGGCCAGAGCTAACGGAGAGCTGGTGTGCGCTCCGTGCAACCGCACATTCTCATCCATCGCGACGTACAAGCAACACATGAAGATCAGCAAGAAACACGCCACAGAGAACGATTTCAAGTACATGTGCAGCGACTGCGGTAAGAGATTCGCGAACAAGACCAAACTGAGGGAGCACGTCGACTGGGAGCATCTAAAGAACTACGTCCACACGTGTTCGGACTGTCACAAGGTGTTCAAGTCTCACACGTCGCTGTACCTACACAGACAGGTGGTACACAAGCGGGTCTCCGCGGAGCATCTCTGCGAGAATTGCGGGAAGGCATTCCCGAACCAAACCAAGCTCCGGTCGCACATAATAGCGCTCCACACGCGCGAGGCTCCATACAAATGCGGCGCGTGCGGCGCGCGCTTCTCCTGGCACAGTTGTCTGTCGCGCCATCTGCGACGCGTGCACAAACACAAATAG
- Protein Sequence
- METEKSNLCCGCLAGDRKMHLIQNLKEQCFLQIIKEITITLPSALSLWLCWECEAYITRFTKFKLQVKHSYQILREFSKQAEFTTNHQKFSVNRVVDITLSPTTDESESTNTAIKTEKEEHLATTMQIKYETDYSEDDDKLLIDICNDSKIKKTKLKRRRKVKVKKEHSIFREVELSEQQIVDERNDLATKDDFVNAMFRCQMCIMSFPNEDDMKEHVWKKHDLHASKHKCSICQCAFSTEVAFNYHQKRHTKRYECLLCNVRCVNKVAVRNHYSTHFHSSTYDFGQKANKNTEARNENHNGAISEEKFPCEYCPKVFGWKTSLRKHVETHRIEAGQKRRPYCEPCRLSFKTTSNLQKHVKTSSKHQIQLKLRKLKESNPQPDTMNDAQIADIKTIVNRQRELYPCEQCDKKFQWRGNLLRHLHSHAARANGELVCAPCNRTFSSIATYKQHMKISKKHATENDFKYMCSDCGKRFANKTKLREHVDWEHLKNYVHTCSDCHKVFKSHTSLYLHRQVVHKRVSAEHLCENCGKAFPNQTKLRSHIIALHTREAPYKCGACGARFSWHSCLSRHLRRVHKHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -