Cleg012773.1
Basic Information
- Insect
- Chesias legatella
- Gene Symbol
- -
- Assembly
- GCA_947359385.1
- Location
- OX375765.1:12865974-12868929[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00077 0.044 14.3 1.2 1 23 252 275 252 275 0.97 2 18 0.007 0.4 11.3 5.1 1 23 280 303 280 303 0.96 3 18 2.3 1.3e+02 3.4 0.6 2 23 307 328 306 328 0.93 4 18 0.00019 0.011 16.2 0.6 1 23 333 356 333 356 0.96 5 18 0.018 1 10.0 0.9 3 23 419 440 417 440 0.92 6 18 0.00024 0.013 15.9 1.8 1 23 446 469 446 469 0.96 7 18 0.0056 0.32 11.6 1.3 2 20 473 491 472 493 0.93 8 18 0.022 1.2 9.8 0.3 1 23 501 524 501 524 0.96 9 18 0.0078 0.44 11.2 1.8 1 23 529 552 529 552 0.96 10 18 0.00095 0.054 14.0 0.2 2 23 565 586 564 586 0.96 11 18 0.0025 0.14 12.7 1.5 1 23 592 614 592 614 0.97 12 18 9.6 5.4e+02 1.4 0.4 2 13 620 631 619 637 0.78 13 18 5.7e-06 0.00032 21.0 0.7 3 23 652 672 651 672 0.96 14 18 7.5 4.2e+02 1.8 0.8 3 23 678 698 677 698 0.88 15 18 0.00058 0.033 14.7 0.2 2 23 715 737 714 737 0.96 16 18 4.2e-05 0.0024 18.3 2.3 1 23 743 765 743 765 0.99 17 18 0.15 8.2 7.1 8.4 3 23 773 793 771 793 0.93 18 18 0.016 0.91 10.2 2.3 1 23 799 822 799 822 0.96
Sequence Information
- Coding Sequence
- ATGGCCACAAAAACTCAGAAGGAGTTGAAGAATATGGAGTGGCTACGAACCCGCATGAAAACTCTGTGGAGCTCGGATAGATACTGCGCCCTCTGCTTATCATCTGACGGGGAGTTCTTGTCACTGGATTTGGAATTCACGGGGAATGAAGAAACTTCTACCAAGCCCCTGAGGCACCTTGTTAACTATGTCTTCAATTTTGATATTGATGACTATGTGCCAAGCGGTCACATGTGCAGTCAGTGTGCTGAACAAATCATACAAATTTACATATTCATAACAAACACTAAGAAAACATATCAAGTATTGAATAATTGCATCAATGATATCCAGTCCAAAGTGAATGATATCAATCACACTTTAGATGCAAGCGTAAAGTATGATGACTCTAATGTCATGATCGTTGTAGAATATGACAATGAAACAAATGAAAAAATCAATGAACTGTGCTCGGGAAATAATGCAATACTGACGGACAAACCCATTGTCATAGCAAAGAATTTATTATACAGAGCTCTTGACGAATCCAATAGCAACACTAAAAACGCATCAGGGACCGAAGACGACCAGGAAAATAAAGGACCGATAGTGGTACAAACACCGAGAATCATCAAACATCCAAGGACTAAGAAAGTCCAAACAGTAGTACAAATGGAAAAGATACAAACTCCAAATGTAACGCTGGAAGGAGGCAAAATTGTCATCGAGCCGTTGATCACAAACAATATACCGTCCGCTTCAAGGTTCAACACATATCCGTGCAACTCTTGTCCGTATATATTCACAACGTACAGATCTTTGAAAGAGCATGAAAAGTCTAAACATAACACTGTAATATTCAAATGCAGATTTTGTGATAAAACTTATAACACTCAACAATATTTAGACGTGCATTACTTGTCTTGTCATGGTAAATCTAGATGCAGATTTTGTAATGAAGTTCTTGACTCGGAAAAACTTAACAGTCATTGGAAAGAGACACATCAGCAACTGATATATGAGTGCCAAGACTGCGGTCTAGTTTACTGTTCAGTAGAAAAATTACAAACTCACATAAAAGCCAGCCATCAGAGACACGGCTTGTCTTTAAAATATGATCACTGCATAATGTGCCTTAAGAATTTGAGAGAGAACGAAAGTGCAAATCACAAATGCATATTTTCTTGTTTGGAATGTTCAAAAGTGCCGTGCGTTCACTACAATTATCTGATGTCTTACAGGGAGCAAGTTTTGAACCATGCACCCAAGATCCGCTGCATAGACTGCGATTACACAACCAAAAGAAAGGAGCATCTCATCGGTCACGTTAACAGAGAACATTTAGACCATCACCCGTTCACTTGCAACGATTGTGGTAACCAGTTTTACACCAAACTCAGTCTTAAAACACACATAATGCAGTTCCACCAAGATTTAAAATGTCAGTACTGCGATGTGGAGTTCAAGAATACAATACATTTGAATAATCATAAAACCCGTTGCCGAGCGGTCACTAGGCCATATGCTTGCCACAAATGTGTCGCTTCCTTCGATATGTTGGAGGATCTCGCGACGCATACTCAAATAAACCACAGCGAGTATGTGTACCCGTGCACGTTGTGCAACAAAGAGTTCCACTTGGAGACCAACCTGGAGGAACACCACGCTAGGGTCCACAGCGGAATCCAATACAAGAAAAGAAGAAAGATCATTGAATGCACAGTGTGTGATATCACATTCAAAAGCCTCAAAGAAATGTTTGCACACGAATCAACGCATCCACCGAGCGAAGTTTATCCCTGCAAAGTGTGTCCCAAGAACTTTTCAAGTCTGAAAAAGGTTTACCTCCACAAACAGAGACACTATTCTCTACGAATGAAATGTTCCGGATGTAAGAAACAAGTCGCTTCGTCCTATTTCGCCCAGCACAAAGCCTTATGTCCATATTTGAAGTCGAAAGAGGCCAAGAATATATGTGAAGTCTGTGGGAAGGCATTCCATCAGCAGTCGAGTCTCAAAGCCCATCAGTTACTCCACGGCCAAAAGGAATCTTGTATTCACTGTGGTAAAATGATCAAGCCAGCTTCGATGAAACAACATATTGAAATGAAACATTATGCATATGTTAAACCCGAAGACAGCACGAAACCACCAGCCGTGATACGGTGTGAGGATTGTGGATATGTAGCGAGGAAGAAAACTGATTTTGAAAATCATATTAATAAGATACATTTGAAAATAAAGCCCTACAGTTGTGATGTGTGTAGAAAAGAGTTTTGTGGAAAGTCACGGTTAGCGGAACACATGAGAACTCATTCCACCAACGATACATGTTTTTGTTCGTGCTGCGGTAAGAAATTTGCAAATAAAGTGTGTCTTAAAATGCATGTTCGCAGACACACCGGGGAGAATCCATATGAGTGTAACATTTGCTTTGAAAAGTTCAGGTCTTCGAGTATAATGAAGACTCATCGTCTCAAGAAACACCAGGATAAGACCGTAGCTTGTCCGTTGTGCGATGCTATGTACCATTTGGTCGCAGAAATGAGGTTCCACGTGAAAAAGGCCCACTGGAAGAGTAACGAGCCGTTTGATTATAAGAAACTAGTCCCGGAAGAATTTCATCATCTGTTCCTAGATCGTAGATTGCAGAAGTTGGGTGATGGCTCTCTGGTGCTGACTGGAAGTGAGCACTAA
- Protein Sequence
- MATKTQKELKNMEWLRTRMKTLWSSDRYCALCLSSDGEFLSLDLEFTGNEETSTKPLRHLVNYVFNFDIDDYVPSGHMCSQCAEQIIQIYIFITNTKKTYQVLNNCINDIQSKVNDINHTLDASVKYDDSNVMIVVEYDNETNEKINELCSGNNAILTDKPIVIAKNLLYRALDESNSNTKNASGTEDDQENKGPIVVQTPRIIKHPRTKKVQTVVQMEKIQTPNVTLEGGKIVIEPLITNNIPSASRFNTYPCNSCPYIFTTYRSLKEHEKSKHNTVIFKCRFCDKTYNTQQYLDVHYLSCHGKSRCRFCNEVLDSEKLNSHWKETHQQLIYECQDCGLVYCSVEKLQTHIKASHQRHGLSLKYDHCIMCLKNLRENESANHKCIFSCLECSKVPCVHYNYLMSYREQVLNHAPKIRCIDCDYTTKRKEHLIGHVNREHLDHHPFTCNDCGNQFYTKLSLKTHIMQFHQDLKCQYCDVEFKNTIHLNNHKTRCRAVTRPYACHKCVASFDMLEDLATHTQINHSEYVYPCTLCNKEFHLETNLEEHHARVHSGIQYKKRRKIIECTVCDITFKSLKEMFAHESTHPPSEVYPCKVCPKNFSSLKKVYLHKQRHYSLRMKCSGCKKQVASSYFAQHKALCPYLKSKEAKNICEVCGKAFHQQSSLKAHQLLHGQKESCIHCGKMIKPASMKQHIEMKHYAYVKPEDSTKPPAVIRCEDCGYVARKKTDFENHINKIHLKIKPYSCDVCRKEFCGKSRLAEHMRTHSTNDTCFCSCCGKKFANKVCLKMHVRRHTGENPYECNICFEKFRSSSIMKTHRLKKHQDKTVACPLCDAMYHLVAEMRFHVKKAHWKSNEPFDYKKLVPEEFHHLFLDRRLQKLGDGSLVLTGSEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -