Basic Information

Insect: Chesias legatella
Gene Symbol: -
Assembly: GCA_947359385.1
Location: OX375791.1:2295470-2299653[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0081 0.46 11.1 0.5 1 23 68 90 68 90 0.99

2 16 2.3 1.3e+02 3.4 0.0 2 22 116 136 115 138 0.88

3 16 0.27 15 6.3 0.1 3 23 162 183 160 183 0.93

4 16 1.9e-05 0.0011 19.4 0.3 3 23 191 212 190 212 0.97

5 16 0.00043 0.024 15.1 0.1 2 23 218 240 217 240 0.94

6 16 0.02 1.1 9.9 2.2 1 23 246 269 246 269 0.94

7 16 0.00026 0.015 15.8 3.9 1 23 275 298 275 298 0.97

8 16 0.041 2.3 8.9 2.9 1 23 304 326 304 326 0.93

9 16 4.9e-05 0.0027 18.1 1.7 1 23 332 355 332 355 0.94

10 16 0.0049 0.28 11.8 1.1 1 23 433 455 433 455 0.97

11 16 0.011 0.6 10.7 0.2 2 23 523 545 522 545 0.91

12 16 0.08 4.5 8.0 2.3 3 23 553 573 552 573 0.90

13 16 1.8 1e+02 3.7 4.1 2 23 579 600 578 601 0.95

14 16 0.028 1.6 9.4 0.3 2 23 605 627 604 627 0.93

15 16 0.0026 0.15 12.7 1.0 2 23 634 656 633 656 0.95

16 16 1.7e-05 0.00095 19.5 0.2 2 23 663 684 662 684 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0081	0.46	11.1	0.5	1	23	68	90	68	90	0.99
2	16	2.3	1.3e+02	3.4	0.0	2	22	116	136	115	138	0.88
3	16	0.27	15	6.3	0.1	3	23	162	183	160	183	0.93
4	16	1.9e-05	0.0011	19.4	0.3	3	23	191	212	190	212	0.97
5	16	0.00043	0.024	15.1	0.1	2	23	218	240	217	240	0.94
6	16	0.02	1.1	9.9	2.2	1	23	246	269	246	269	0.94
7	16	0.00026	0.015	15.8	3.9	1	23	275	298	275	298	0.97
8	16	0.041	2.3	8.9	2.9	1	23	304	326	304	326	0.93
9	16	4.9e-05	0.0027	18.1	1.7	1	23	332	355	332	355	0.94
10	16	0.0049	0.28	11.8	1.1	1	23	433	455	433	455	0.97
11	16	0.011	0.6	10.7	0.2	2	23	523	545	522	545	0.91
12	16	0.08	4.5	8.0	2.3	3	23	553	573	552	573	0.90
13	16	1.8	1e+02	3.7	4.1	2	23	579	600	578	601	0.95
14	16	0.028	1.6	9.4	0.3	2	23	605	627	604	627	0.93
15	16	0.0026	0.15	12.7	1.0	2	23	634	656	633	656	0.95
16	16	1.7e-05	0.00095	19.5	0.2	2	23	663	684	662	684	0.98

Sequence Information

Coding Sequence: ATGACACTTTTGGTCAAAAAAACCGCGCCAGCTCCAGCTACTACCAGATCAGACACAAAACTAGTGACGCCGACCTCGACGAAGGCCTCGTCAAAACCCAAAGGTTTATCATCGAGGGACAAACGCAATATCATGATACGAAATGTGCTCGAAATTCTGCTTAAGACGACCGTCATGCCTTTCCGCTGGCTGCGGAGCTCCTACCGATGCTTCTACTGCTACGAAATATTCCAAGAAGTGCCGGAACTGAAAGCACACCAGAGCACTCATACAGATGACTCCGTCAAGGAGAAGACTATGAACAAATTCTGGGAACCGGTCGTCTACATCGATGTTTCGGACATGAAATGTAGACTTTGCCCGGAAACAATAGCAGATTTGTACGATATGATCGATCATTTAGTGGCAAGACACGGCGTCGCGTACAACAAAGATGTGGAAACCAGCATCGTCGCGTTCAAACTGAACAGCAACGATATAAACTGCCTCGCTTGCGGCGCAACCTTCTACACGTTCGGTCCCTTACTCAACCACACGAATAAGGACCACAAAGGCACCTCGGCGATCCTGTGCGAAGTTTGCGGTCAGAACTTCAAAGATCAAAATCTCCTGCGCGCCCACATCAAATCCACCCACGACAACAGCGGAGTGCCGTGTCCGGATTGCGGTGACAGATTCGATACTAGATCTAAGTTGATCACGCATCAGATCAACCAGCACGGCTTGGAGAAGAAGTTTAAGTGTCTCGTCTGCGATCTGACCTTCCAGACGCACTACAAAAGGTCGAGGCACATGGCAGCGGACCACAAGAAGAGGCAGGAGTTCAAATGCCTCCACTGTCCCAAAACCTTCATCTTCAGGAGTCTGATGATGACCCATCTGAGATACAATCATCTGAAAGTTCGCAACCACATATGCGACGTTTGCGGGTGGAAAGCATTCAACAGTCACcggctgaagaaccatatgtaccagcacagtggagagaggaatttcaaatgtgatggatgcgagaagtcttttactaccaggaaGACTATGAGGGCTCATTTCGCGAGGATGCACAAGGCGCCGCAACAACCAGTTTCTGAACACTATAACGCTAGTGAATTGCAATATCCCAACGCGACAGAATTGAGCGACTACCCGCAACGCTCACTCACAGACACAGAGAGTGAGTCCGATATCTCACAGACACCAGTCGAGATAAACCAAGTTCTTGAAGACTTGAGAACGAACATCAGGAATTTGGTGCAATCCTCCACAGTCATGCCTTTCATATGGCTCTCGACAGCCTACAGGTGTTTCTACTGCTACGACGTCTACCGGCGGCCGGAAGACCTAAAATCCCACTACATACTCCACGAAGACTCAGAAATTTCTCACGCGATGAACAAATTCTGGGACTCTTACGTTTACATCGACGTTTCTGTTCTGAACTGCAAACTGTGTTCGGCTGAATTGGAAGCAATGGACGACTTAATATCCCATTTGGTCGAACACCACAAGATACCTTATAACGAAGACGTGCGTTGCTTCCAAGCCTTCAAGTTAGGCGACAAAGTTACCTGTACGATTTGTAATGAGGAGTTTATTAATTTTGCCCAACTTCTCATCCACTCTACGTCTAAACACCAGCATAGCGACGACATCCTATGCCACGTGTGTGGGAGGACTTTTAAGCCTCACCAGATAAAGATGCACCTAGCCAATGAACACCGCAGCAAAGTGGTTAAATGCACCAAATGCAACGACAGCTTCACAGCTCACACTATACGGACTCACATGACGCGGGTACACCACAGAAGGATCAAATGCAAAATGTGTCCGGAAACATTCCAGACTGTTTACAAACGAGCCGCCCATATGACTAACGTGCACAAAGGCAGAGAGCCGGTCGAATGTCCGTTCTGTCCGAACGTCTATTACTTCCACAGCACGTTGAGGAGGCACGTCAGACAGATGCACGGGAAGGAAAAGGCAGTGCAGTGCGACATTTGTGGGTGGAGGGGTTCCAAAGCGTTTAACCTGAAGATCCACATGAGGAAACATGAGTAG
Protein Sequence: MTLLVKKTAPAPATTRSDTKLVTPTSTKASSKPKGLSSRDKRNIMIRNVLEILLKTTVMPFRWLRSSYRCFYCYEIFQEVPELKAHQSTHTDDSVKEKTMNKFWEPVVYIDVSDMKCRLCPETIADLYDMIDHLVARHGVAYNKDVETSIVAFKLNSNDINCLACGATFYTFGPLLNHTNKDHKGTSAILCEVCGQNFKDQNLLRAHIKSTHDNSGVPCPDCGDRFDTRSKLITHQINQHGLEKKFKCLVCDLTFQTHYKRSRHMAADHKKRQEFKCLHCPKTFIFRSLMMTHLRYNHLKVRNHICDVCGWKAFNSHRLKNHMYQHSGERNFKCDGCEKSFTTRKTMRAHFARMHKAPQQPVSEHYNASELQYPNATELSDYPQRSLTDTESESDISQTPVEINQVLEDLRTNIRNLVQSSTVMPFIWLSTAYRCFYCYDVYRRPEDLKSHYILHEDSEISHAMNKFWDSYVYIDVSVLNCKLCSAELEAMDDLISHLVEHHKIPYNEDVRCFQAFKLGDKVTCTICNEEFINFAQLLIHSTSKHQHSDDILCHVCGRTFKPHQIKMHLANEHRSKVVKCTKCNDSFTAHTIRTHMTRVHHRRIKCKMCPETFQTVYKRAAHMTNVHKGREPVECPFCPNVYYFHSTLRRHVRQMHGKEKAVQCDICGWRGSKAFNLKIHMRKHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -