Cleg002161.1
Basic Information
- Insect
- Chesias legatella
- Gene Symbol
- -
- Assembly
- GCA_947359385.1
- Location
- OX375791.1:31493-35993[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.018 1 10.0 0.2 1 20 127 146 127 148 0.94 2 24 0.089 5.1 7.8 1.1 1 21 178 198 178 200 0.94 3 24 0.018 1 10.0 1.0 2 23 210 232 209 232 0.93 4 24 0.13 7.3 7.3 3.6 3 21 237 255 237 256 0.95 5 24 0.00011 0.0061 17.0 0.7 1 23 267 290 267 290 0.94 6 24 0.00032 0.018 15.5 6.0 1 23 296 318 296 318 0.98 7 24 0.018 1 10.0 4.4 1 23 325 348 325 348 0.97 8 24 0.0085 0.48 11.0 1.1 1 21 361 381 361 385 0.90 9 24 0.043 2.5 8.8 0.1 1 21 514 534 514 535 0.94 10 24 0.7 39 5.0 3.0 3 23 568 589 567 589 0.96 11 24 0.00068 0.038 14.5 0.3 1 22 594 615 594 617 0.90 12 24 1.4 80 4.0 5.3 1 21 620 640 620 641 0.90 13 24 0.015 0.84 10.3 2.0 1 23 653 676 653 676 0.93 14 24 0.0017 0.097 13.2 2.1 1 23 682 704 682 704 0.97 15 24 0.56 32 5.3 1.0 1 23 738 761 738 761 0.87 16 24 8.1 4.6e+02 1.6 0.1 1 11 769 779 769 783 0.87 17 24 0.065 3.7 8.3 0.6 2 20 888 906 888 908 0.93 18 24 0.0035 0.2 12.3 0.2 3 23 971 991 971 991 0.94 19 24 0.21 12 6.7 0.7 2 20 995 1013 995 1015 0.94 20 24 1.4e-05 0.00081 19.8 0.7 1 23 1041 1064 1041 1064 0.95 21 24 0.017 0.99 10.0 2.4 1 23 1070 1092 1070 1092 0.93 22 24 0.0019 0.11 13.1 0.1 1 23 1098 1120 1098 1120 0.98 23 24 0.03 1.7 9.3 0.1 1 23 1126 1149 1126 1149 0.93 24 24 0.0012 0.068 13.7 0.5 1 23 1155 1178 1155 1179 0.96
Sequence Information
- Coding Sequence
- ATGGACGACACGCCGTCGCCGTCGTTGCCGCAACAAATATGCAATCACTGTGTGTCTCACGTGACGGAGTTTCTGCCCTTCCTTAAACTGTGCAAGGAGTCCGCCGCGCGCTGGAACTCGATCGCTGAACGACTCGTCCACGCGATCCATCCCCACGATAAAACCACCGCCGCCTATGTAATCGTCGTCGGCGACCACATCACGACGGTGCAACACACAGACAAAACAAAACATAACAATATGAGAAACGTTACAATGCGAATCAATAATCTGCTAACAAGACAGAGAAACAAGTTCGCAACTAACGGCAAACCGGCGCCGGCGCCTACAGACACGCGGCGAGTACGCGGCCTCCGGAGGCTCTGCAAGTCGCAGCTGTACACCTGCCCCGAATGTGGATCTAAATATAAGCAGATGAGTAAGATAAATCAACATTTGGCAAACCAGAATAAAAAACTGTGCAGACATTGTTACAAAATAGTAAACCTGAAAAGTTTCGGCGAGCACTTGCAGACGCACAGGATCCCCTGTTACAAGTGCGCCGTCTGCCGCTTGGCTTTCGAATCTCAAGAGCAGGTGGTGAAGCACGAGAGGTGTCACATAGCGCGGAGGCGGGGCGCGCGGTCGACGTGCGCCGCGTGCCAGAGAACCTTCCCCACTGCGGACACGCTCACGCTGCACGTCCACAGGAGGCACGAGCCCGACTGGTGCCGGAGTTGCGACCGGAAGTTCACCAACCGCGTGTGTCTCTACAAGCACAGGAGGGAGTGCGGCTGCGGCGACCGCGCCTCCAGACGCTACATCTGCGACCACTGTTCCAAGGTGTTCAAGGATAGGAGCGCGATTAAACTGCACATATCGTTGATACATTCGCGACGGCTGATGCACCAGTGCGAGAAGTGCGGCAAGCAGTTCAACAGCGCTTGCCATTTAGAGGAGCACTACGAGACCCACGAGTACAAGCCGGACAGGTACGCGTGCAAGTACTGCAGCAACAGGTACAGCACCTGCGGCGGCTTCAGGAAGCACGTCAGGAGCAAGCACTACAGCGTCGATCCGCAACTGAAGACCGCAGACAGGTATCCCTGTCAGCCCTGCAACAGGAACTTCATCAGTCAAAAGATGCTAACCAAGCATCTCAAAGCTAAGAAACATAAAGCCCAAGGTGATAAAAATGAATCCCTCAAGAATAGTAGCGTTGAACTGGAGTACTTCGATAACTGTGACGTTGAAGAAGACGCCGCCCTGCCGCCGGGAGTGTGCCACCGATGCGTCGAAGACGTCCTCAGAGTCGTCAGCTTCAAACAGTTGTGTCGGAGATCTGCCCGCCGGTGGCGGGAGGCGATCGCCGACCTCTCGCAGATACACCTGGACGCCCGCGCCCGCGCCCGCGCCGACAACAAGGCATTGTTTTACATTTACCATAACAAACATTCGCTGATGAGCGCGAAGCGGATCGACACCGTACAAAACGCCGTTACAACTCTAGAAAAGATTCAGAGGAAGCGTCACAACAAACAAAAGAAAAGAGAACACACGTTCTCGTGTACGTTTTGTGAACAAACGTTTGGTACCGCGGTCGCGCTGAGCGATCACTCGAGGAGCGGCCGGAACAGAGTGTGCCGCAGTTGCGGTCTGCTCCTGAACAAGCGGGAGCTGGCGTCACACTTGCGCGAGGCGCACCGCGTCCACACCGTCGACTGCAAGATCTGCCACGAGCTGTTCCAGAGCTACGAGGCGGCGAACCGGCATCTGCGCCACTTCCACGCGCCCACCTCCTTCACGTGCAAGGACTGCGGCCGCGGGTGTCGCAACGAGAGGGGGCTGCGCGCGCACGCCGCCGCCGCGCACTCGCTGTTCTGCTGCCTCGGCTGCGGGCGGAGTTTCGAGAACGACCGCTGCTTCAGATACCACAGGTCGCGCTGCAAACAGAAACCTCGCCCCGAGAGTGACATGTTCGAGTGCGGCCACTGCGGCGTGCGCTACCACAAGAAACCTTCCCTGCGCGTACACATCGTCCAAAAACACATGAACGTGTTGCCGTTCGTGTGCGTCAGTTGCGGCAAGCGCACGTCCACGTTGAACCACCTGCGCTCCCACGAGAGCACCCACGAGCCGCACCGGCGGTGGTGGCGGTGCGAGTGCGGCGCGCGGTTCCGGTCGCGGCTGGGGCACCGGCTGCACCGGCGCGCGCACGCCGGCCTCAAGCCCTACAAGTGCACCGTCTGCGAGGAGAGCTTCCTGTCGGCGTCGCGCCGGCTCGACCACACCAAGCGGCGGCACCAGCGCGTCGCGGACATGGCGCACCCGTGCACCGACTGCCCCGCGCGCTTCATAGAAGAGGACGGCGTGTGCCCCGAGGTCGTGTGCGTGTCGTGCGCCTCCGCCGCGCTCGCCGCCGAGGAGTTCCGCCTGTTCGTGCACAACTCTGAGAGGATGTGGCTTAAGGCGCTCGCCAACCTGCACACCGTGCACGCGCACCACACGGGGAGCGCCAAGTCCATCTGCGCGTTCGTCGCGGAGGCGGACCTCGCCACGCGCGTCTGCGAGGACTTCGCCGGCGGGGAGCCGCGCGCCGTCGTCAACAGGTCCGGCGGGCGCCCCGAGCGGCGAGCCCGCGGCGCGCGCCCCGCCGCGCCCGCCTCGCCCGCCTCGCCCGCCGTCTGCCCCAGCTGCCTGAAGCGGTTCGCGAGCCCCCACCTGCTGCACCTGCACCTCTCCAACGACGAGCAGAGGGACGCGTGCCTCACGTGCGGGGCGGTGGTGCCGCGCGGCGCACCGCTGCGGGACCACCTGGCGGAGGTGCACCGCGAGAGCGCGCACCTCTGCCCGCGGTGCCCCACCGTCCACTACTCGGCGGCGGAGGTCCGCGCGCACGAGGCGAGGGCGCACGCGGCGGGCGTGCACGGGTGCGCGGCGTGCGGGCGCACGTTCCCGCGGCGCGAGACCCTCGACAACCACGTGCAGATGCACGCGGTGCGCACGTGCCGGCGGTGCGGCGCGCAGTTCACGAACCGCGCGTGCTACCGCGTGCACCGCGCGGCGTGCGAGCCCGGCGCGAAGCCCCCGCCGGCGTCGGTGTCCGCGAGCCGGCGCTGCAACGTGCGCGACCCGGCGGTGTACACGTGCGACTACTGCCGCAAGAGCTACAGGTCGCGGCCGCAGCTGCAGAACCACATCCTGTGGATCCACCTGGACCACCGGCCGCACCAGTGCCAGTGGTGCGGCCACAGGTTCTACACGTCCGCGCGGCTCAACGAGCACAGCGTGGTGCACACGCGCGCGCGCAACTACCCCTGCGACATATGCGGCGCGCGGCTCGTCTCCAAGAGCGCGATGGTGTACCACCGGCGGCGGCACACCGGCGAGAAGCCGTACGCGTGCGACGACTGCGGCGCCGCGTTCATATCCTCCTCGCGGCGGCTCGAGCACGCCAAGCGCAAGCACAACAAGGGCACCAGGTTCCAGTGCGCGCGCTGTCCCGCCGCCTTCGTCAGGCGCATGGAGCTCAACAAACACGCGCAGAAAGCGCACCACAAACCTGACCACACGTAG
- Protein Sequence
- MDDTPSPSLPQQICNHCVSHVTEFLPFLKLCKESAARWNSIAERLVHAIHPHDKTTAAYVIVVGDHITTVQHTDKTKHNNMRNVTMRINNLLTRQRNKFATNGKPAPAPTDTRRVRGLRRLCKSQLYTCPECGSKYKQMSKINQHLANQNKKLCRHCYKIVNLKSFGEHLQTHRIPCYKCAVCRLAFESQEQVVKHERCHIARRRGARSTCAACQRTFPTADTLTLHVHRRHEPDWCRSCDRKFTNRVCLYKHRRECGCGDRASRRYICDHCSKVFKDRSAIKLHISLIHSRRLMHQCEKCGKQFNSACHLEEHYETHEYKPDRYACKYCSNRYSTCGGFRKHVRSKHYSVDPQLKTADRYPCQPCNRNFISQKMLTKHLKAKKHKAQGDKNESLKNSSVELEYFDNCDVEEDAALPPGVCHRCVEDVLRVVSFKQLCRRSARRWREAIADLSQIHLDARARARADNKALFYIYHNKHSLMSAKRIDTVQNAVTTLEKIQRKRHNKQKKREHTFSCTFCEQTFGTAVALSDHSRSGRNRVCRSCGLLLNKRELASHLREAHRVHTVDCKICHELFQSYEAANRHLRHFHAPTSFTCKDCGRGCRNERGLRAHAAAAHSLFCCLGCGRSFENDRCFRYHRSRCKQKPRPESDMFECGHCGVRYHKKPSLRVHIVQKHMNVLPFVCVSCGKRTSTLNHLRSHESTHEPHRRWWRCECGARFRSRLGHRLHRRAHAGLKPYKCTVCEESFLSASRRLDHTKRRHQRVADMAHPCTDCPARFIEEDGVCPEVVCVSCASAALAAEEFRLFVHNSERMWLKALANLHTVHAHHTGSAKSICAFVAEADLATRVCEDFAGGEPRAVVNRSGGRPERRARGARPAAPASPASPAVCPSCLKRFASPHLLHLHLSNDEQRDACLTCGAVVPRGAPLRDHLAEVHRESAHLCPRCPTVHYSAAEVRAHEARAHAAGVHGCAACGRTFPRRETLDNHVQMHAVRTCRRCGAQFTNRACYRVHRAACEPGAKPPPASVSASRRCNVRDPAVYTCDYCRKSYRSRPQLQNHILWIHLDHRPHQCQWCGHRFYTSARLNEHSVVHTRARNYPCDICGARLVSKSAMVYHRRRHTGEKPYACDDCGAAFISSSRRLEHAKRKHNKGTRFQCARCPAAFVRRMELNKHAQKAHHKPDHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -