Cleg015023.1
Basic Information
- Insect
- Chesias legatella
- Gene Symbol
- -
- Assembly
- GCA_947359385.1
- Location
- OX375792.1:3001347-3021014[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.018 1 10.0 0.1 5 23 20 39 19 39 0.95 2 18 8.7e-06 0.00049 20.4 0.6 2 23 252 273 251 273 0.97 3 18 0.0019 0.1 13.1 2.6 1 21 279 299 279 301 0.95 4 18 7.6e-06 0.00043 20.6 1.4 1 23 307 329 307 329 0.94 5 18 5.9e-05 0.0033 17.8 0.8 1 23 335 358 335 358 0.97 6 18 0.029 1.6 9.4 0.6 1 23 654 677 654 677 0.92 7 18 0.58 33 5.3 3.0 1 23 681 703 681 703 0.98 8 18 0.0012 0.07 13.7 7.5 1 23 708 731 708 731 0.98 9 18 0.1 5.8 7.6 0.4 1 23 735 758 735 758 0.96 10 18 1.1 62 4.4 1.2 2 13 771 782 770 783 0.90 11 18 0.002 0.12 13.0 0.0 3 23 805 826 803 826 0.95 12 18 0.0071 0.4 11.3 1.4 1 23 844 867 844 867 0.97 13 18 0.47 27 5.5 0.6 3 12 885 894 883 896 0.86 14 18 2.1 1.2e+02 3.5 2.5 3 10 914 921 912 941 0.52 15 18 0.00023 0.013 15.9 0.9 3 23 959 979 957 979 0.95 16 18 0.0059 0.33 11.5 2.6 1 23 985 1007 985 1007 0.96 17 18 4.5e-07 2.5e-05 24.5 1.5 2 23 1013 1034 1013 1034 0.97 18 18 0.033 1.8 9.2 1.9 1 23 1040 1063 1040 1063 0.96
Sequence Information
- Coding Sequence
- ATGAGCGAGGAAAATGCCGCAGCAAATTCGCGTATTCGTATCCACTATATTATCTGTGAGTGCGGTGAGACATTCCCTTCAGAGAATGCCTTGAAGTCTCATTTGGAAAAAGAACATCCACGGAAAAGGGAAAGAAAAGAGTATAAATGCGGTGTGTGCTATGACATTTTTGACACCAAAATTAACTGCATAAAACACTATGAAGAAATGCACTTTGAAGTCAGCACTGCGGCTGCAGACGATGAGTTGTACGACGACGAACCAACCAATGAAATGGAAACGCACGGGACTGAGTTAACAAGTACAGTCAACAAACAGTATGACTTGGGCACTGAATATGTGAATGGACAAGAAATGTACGGTCAAATGGAAGAGGAATTTATAATTGAGGATCCAACGGGCAGTTACGGTGTACAGCAAAATGAAGAGGTGGCGGAGGCATTTAATGAGGAGGAAGTAGGGGAGTTAGAGGGGGAATATGTTAACCAGGAGGATTTCATTGGGGATGAGTATGATGAGGGGCTACAGATTAAGGAGGAAATGGAAGAGGGTGAGATACCGCTTGAGGAGGGAGAGATTCCGATTTACCATATTGAAATGCCAAAGCCAAAGATGAAACGTGGGAGGCGTATTATACCCAAGAGCGGGCCAGATCCCCAGCTCATATTCGTTGTTGCTGAAGGCAAGAACCAAGGGCAGATGGTCTCCATGCTGAAAAAGAGTGGTAGACTACCTAAAGGAGAGAGGACAATCACGTGTGAAGTCTGTGGGAAACATTATGCGTCGAACGCGGCACTCCGCTATCACCAGCGCACTCACACCGGTGAACGACCCTACAAATGTCACATTTGCCCGAAGGCCTTCACCATGCCGCTGTTCCTGCAAATCCATGTTCGTTGTCACACTGGCGAGCGTCCCTTCCAGTGTTCTCATTGCGACAAGGCATTCAGCAACAAGGCGGCGTTACTGCGACACGACAGGGTGCACACAGGTGAAAAGCCATACAAATGTCCGATGTGTGCGAAGACATTCACCCAATCCAACTCCATGAAACTCCACGTGACCACCGTACACTTGAAACAACCTACACCGTACAAGAGCAAGAACCGGAAACTGAAAGCGTTGGAACACCAGAACAGTGTGATGAAAGTGAAACCAAACCCGAGGAAAAAGCTGCCAGTCGTTGTGGACAGTGTGGACGTTCTCAGAAACGGACTGGAGTCATATGTACTCGGTCCGTTGAAGACGGATCTTGAGAAGTTTAAGAGTGATATTGATAGGCTTACTAGTGGAGAGTTTGAGAGTGATATGGAACGGATCAGTGCTGTTGGATCCATCGAGAAGGAAGCCAGTGTGTTCGAAGTGGTTGAAAGTGAGGTTATGTATGACGATGAGAGAGGTTATTGTGAGGTTGTCTGCGCTGGGGATGAGATTGCTTCCGGCGACTTTTCTGATGATGATAAATGCCTCTTGGAATATACAAAAGACGAGCATTGCTTACTGGTGCCAAGAGATACCGGAAAGAAAGAGAAAAGTGTTAAAACTGAAAAGAGGAAGCAGAAAAGTGTTAAAACGAAAAAGTGCAAGCAGAAAAGTGTTAAAACTAAAAAGAGCAAGCAGAAATGTTTGAAAATTATGAAAGAAAATCCAGAACTAATTTTAGATGAAACTCAGCTCAAGAAGAAACGGGGCAGACCGGCCAAGATATGTACCCTGCCACCCGAAACCAAGGTCAAGAAGAAAATGGGCCGACCGTTGAAAGACCACAAGGAGTACGAATCAGTGTTTGACATCACACTGTTCCCCAACGATGCAGCGGTCAGGGAGGAGTTTGCTAACAGGAAGTACTCGGAGCACTACCTGAACGCCATGCACAAGTGTACCGTCTGCTTCACATCGTACAAGTGTGATAAGCTGCTCCAATTCCACATGAAATGGCATCAGTTGTCTGCCGGTGATTTCCCGTGCGACGTGTGCGCGATGCGGTTCAAGTCGAAGCTGTCGATGAGGAAGCACAAAGCGAACGTGCACTTCGGCAGGTTCCAGTGCAAGAAGTGTCCTCTCATCACATATCACaaAATGGTCATGATACTGCATTATAGAAAGCATCAGGGCGTCAGTTATGTTTGCAAACATTGTAAACGCACTTACAATCACAGTTCAACGTACCTGTCTCACCTGCGGAAGTCCCACCCCTCCGAGCACGTGTGCGTCACGTGCGCGCAGACGTTCGTCTCGGACAAGGGGCTCGCAGTGCATCGGAAGAAAGTGCACGACGCGTCGTCCAAATACGACGCGGGCGCGAGCATCCGGTGCGAGGAGTGCGACCTCACGTTCTGCACGCGGCGGATACACAACGTGCACCTGCTGAACACACTCAAACACAAACACATCGCCGACACACTTATCGCGTGCCCGGAGTGCGGGGAGGAGTTCCCGGACAAGCTGCTGGTGCGCGCGCATCGCCGCCAAGCGCACCCGCAGTACAACTTCTCCGCTATGAAGCAGGGGGAGGGAATGGGGAGAGGACATAAGTGTCCCTTATGCGGTCTGAGCGGCACGTTCAACACGTGGCTGTACCGGCACTTCCAGACGGATCACCCGACGGAGTGCTACGAGACGTGCGTGCGTAGCGAGCGACGGAAGCACCTCTGCGACCAGTGCGGGAAGAGCTTCTACACGGATCACCCGACGGAGTGCTACGAGACGTGCGTGCGTAGCGAGCGACGGAAGCACCTCTGCGACCAGTGCGGGAAGAGCTTCTACTGCGGTCTGAGCGGCGCGTTCAACACGTGGCTGTACCGGCACTTCCAGACGGATCACCCGACGGAGTGCTACGAGACTTGCGTGCGTAGCGAGCGACGGAAGCACCTCTGCGACCAGTGCGGGAAGAGCTTCTACAATATAACGCAGTTGACAGAACATGCCAACGTGCACACAGGACTGAAGCCGTTCCGTTGCGACAAGTGCCCGGCCGCCTTCCGCTCTAAAACGCATCTCAAGTTCCACGTGGAGAGGCACGCGCCGCCGTCGCGCGAGTGCTCGCACTGCGGCAAGAAGTTCGTCAGCGCTGCCAACCTCAGCAACCACATGCGGTCTCACATCGGCGACCGTCGCTACAAGTGCACCTACTGCGCGAAGGGGTTCCTGCACTGTGCGGCGCTGCGCGAGCACGTGCGCGGCGTGCACCTGCACATACGACGCCCGCGCAAGCCGCACCACGAACACAACTACGAACACTCTGTATAG
- Protein Sequence
- MSEENAAANSRIRIHYIICECGETFPSENALKSHLEKEHPRKRERKEYKCGVCYDIFDTKINCIKHYEEMHFEVSTAAADDELYDDEPTNEMETHGTELTSTVNKQYDLGTEYVNGQEMYGQMEEEFIIEDPTGSYGVQQNEEVAEAFNEEEVGELEGEYVNQEDFIGDEYDEGLQIKEEMEEGEIPLEEGEIPIYHIEMPKPKMKRGRRIIPKSGPDPQLIFVVAEGKNQGQMVSMLKKSGRLPKGERTITCEVCGKHYASNAALRYHQRTHTGERPYKCHICPKAFTMPLFLQIHVRCHTGERPFQCSHCDKAFSNKAALLRHDRVHTGEKPYKCPMCAKTFTQSNSMKLHVTTVHLKQPTPYKSKNRKLKALEHQNSVMKVKPNPRKKLPVVVDSVDVLRNGLESYVLGPLKTDLEKFKSDIDRLTSGEFESDMERISAVGSIEKEASVFEVVESEVMYDDERGYCEVVCAGDEIASGDFSDDDKCLLEYTKDEHCLLVPRDTGKKEKSVKTEKRKQKSVKTKKCKQKSVKTKKSKQKCLKIMKENPELILDETQLKKKRGRPAKICTLPPETKVKKKMGRPLKDHKEYESVFDITLFPNDAAVREEFANRKYSEHYLNAMHKCTVCFTSYKCDKLLQFHMKWHQLSAGDFPCDVCAMRFKSKLSMRKHKANVHFGRFQCKKCPLITYHKMVMILHYRKHQGVSYVCKHCKRTYNHSSTYLSHLRKSHPSEHVCVTCAQTFVSDKGLAVHRKKVHDASSKYDAGASIRCEECDLTFCTRRIHNVHLLNTLKHKHIADTLIACPECGEEFPDKLLVRAHRRQAHPQYNFSAMKQGEGMGRGHKCPLCGLSGTFNTWLYRHFQTDHPTECYETCVRSERRKHLCDQCGKSFYTDHPTECYETCVRSERRKHLCDQCGKSFYCGLSGAFNTWLYRHFQTDHPTECYETCVRSERRKHLCDQCGKSFYNITQLTEHANVHTGLKPFRCDKCPAAFRSKTHLKFHVERHAPPSRECSHCGKKFVSAANLSNHMRSHIGDRRYKCTYCAKGFLHCAALREHVRGVHLHIRRPRKPHHEHNYEHSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -