Basic Information

Insect: Chesias legatella
Gene Symbol: -
Assembly: GCA_947359385.1
Location: OX375778.1:6032617-6043591[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.096 5.4 7.7 0.6 6 22 15 31 9 31 0.86

2 12 0.11 6.1 7.6 0.1 3 20 38 55 36 57 0.92

3 12 0.14 8.1 7.2 0.2 1 12 188 199 188 208 0.88

4 12 0.00036 0.02 15.4 0.9 1 23 357 379 357 379 0.98

5 12 9.7e-06 0.00055 20.3 0.8 1 23 393 415 393 415 0.98

6 12 9.4e-06 0.00053 20.3 0.3 2 23 465 486 464 486 0.96

7 12 0.0003 0.017 15.6 1.6 1 23 502 524 502 524 0.98

8 12 6.9e-07 3.9e-05 23.9 4.0 1 23 530 552 530 552 0.98

9 12 0.0023 0.13 12.8 5.0 3 23 560 580 558 580 0.97

10 12 1.8e-06 9.9e-05 22.6 0.4 1 23 586 608 586 608 0.98

11 12 0.00028 0.016 15.7 1.1 1 23 612 634 612 634 0.98

12 12 0.00012 0.0066 16.9 0.1 1 23 642 665 642 665 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.096	5.4	7.7	0.6	6	22	15	31	9	31	0.86
2	12	0.11	6.1	7.6	0.1	3	20	38	55	36	57	0.92
3	12	0.14	8.1	7.2	0.2	1	12	188	199	188	208	0.88
4	12	0.00036	0.02	15.4	0.9	1	23	357	379	357	379	0.98
5	12	9.7e-06	0.00055	20.3	0.8	1	23	393	415	393	415	0.98
6	12	9.4e-06	0.00053	20.3	0.3	2	23	465	486	464	486	0.96
7	12	0.0003	0.017	15.6	1.6	1	23	502	524	502	524	0.98
8	12	6.9e-07	3.9e-05	23.9	4.0	1	23	530	552	530	552	0.98
9	12	0.0023	0.13	12.8	5.0	3	23	560	580	558	580	0.97
10	12	1.8e-06	9.9e-05	22.6	0.4	1	23	586	608	586	608	0.98
11	12	0.00028	0.016	15.7	1.1	1	23	612	634	612	634	0.98
12	12	0.00012	0.0066	16.9	0.1	1	23	642	665	642	665	0.96

Sequence Information

Coding Sequence: ATGGGAGATTCTGCAGATTTAAAATTGAATTGTCCCCTATGTTGCAATGAGACTTTCAGCTCCAGGGAATTATTATTTGAGCATCTGAGTACAACGAATGGAAACTTGTTCTGTCCTATTTGTAATAATAAATTTCCATCTATTGTCGAACTTATTGAACATTTGAGTCACAAGAATTGTCCAGAAACTGAAAGTTCACAAGCAATCAAACTCACAACTATAACTGTAGAACATGAAACCAATTCTCACTGTGGCCAAAATGATACTATCAACAAATCTCCAAACACACTTTTGTCTGGCCAAAAATTAGAAGCCACGGAGGATAGTGATGTTAACAAAATGTATGTTGAAATAATGAGGAATCAGACACAGGATCTGGAGTTTATGAAAGATGGCAACAATCAATATGTAATTGTTTCACAAGATCACGAAGGCATAGTTACTAAGCAGAACAATGATGGTACTATATCATTGACGTCTGTAAAAGACCTGAAAATGGAAGATGCTGATCCGATGATCTCTGGTGGGGAACAGGAGACAGATGACAACCAGGAGGGCTTGTACAGCTGTAATACATGCGGAGTGTCTTTCACGTCTGTGATAGATCATATACAGATCTATCATAATGACCAGGATGTTGTTGTTGAGGAACCAATGGATGAGACTGAAAATGAACAAATACCAATAGAATTTGAGATGGTGGAAAATGAGGAGTCATCAACTGCAAAGCAGACCTCAAGGCGAGTAATCACTGAAACGGGCGATATTGTGGAGGCACCGATTGAGAAGAAAAGAAATGACGAAGATTTGTCTGTAGGGAAGCAGAAAGTTCTAGAGAAAACGACGGGGCCCGGATCGAAACGGTACATGCGTATGAACAATTTGTGCGATAGTGTCGTGAGGGACTTGAAAAATGATCAAAAATCCCAGGGTCACGAACATAAAGTGTTAGTGAAGGATGTTATGACGAAAGATGGCGAATGCATAAAAATGTATCACTGCATCTTTTGCAATGTATACGTTAGCTCGCTGAGTGATTTCAAACAACATCCGTGCAAGAACTCAAAATACTCATGTCTACAATGTCCCGTGAAATACGACAACGCGAAATCATTATGCGCCCATATGAAGGTGCATAAAGTAAAAACAGATGATAACAGCGAAGTAAGTGAGACGTTTGAATGCGAGATCTGTAGCACAGTGTTTCCAACAAACAAGTCATTGAAACTACACAAGAGGATGCACGACCCTGTAAAGGCGCGTCAAATAGAAGCCCCTAGAAACTCGGATTTTTCCGAATTGCGGTACCTTTGCCAAATATGCGAGAAGATGATACCGATCGACTACAAAACAATACACGAGAACTCACACAAGAACGAAGAGAAGATGCTCAATTGTGGCATCTGCAACAAGAAGTTCACCTCGGAGGAGTATTTGGAAATGCACATGAATGTACATAATTTAGATAAGGCACCTCTTTCAAAACAAGACCCAGCGCTACCGTACAGCTGTGTCTACTGCGACAGGAGGTTCGCTCGGCCGCACGAGAAGGTCAAACACGAGAGAATACATACTGGTGAGAAACCGCACGAGTGTGAAATATGCGGCAAATCGTTCCGTGTGTCGTACTGTCTCACTCTGCACATGCGCACGCACACCGGCGCACGACCCTACGGATGCCCGCACTGTGGGAAGAGGTTTAAAGCTCACAGCGTGTACAACCATCACCTGTTGACGCACTCGGAGGTGCGCGCGTACAAGTGTCCGTACTGTCCGAAGGCGTTCAAGACGTCCGTACAACTGGCCGGACATAAAAACTCGCACACCAAGCCGTTCTCCTGCACGCACTGTAACAGGCCGTTCGCGTCTCTGTACGCGGTCCGCGTGCACACGGAGACGCACGCGCGCCAGAACAATCTCAAGTTCAACTGTGAGTTGTGCGGCGCGAGCTACGCGCGGGCGTTCGCGCTCAAAGACCACATGAAGCAATTGCACTGCACCGACGTCAAAACTGAGGTTTTGCTCACTTCCCAAGAGGAGTGGAGCGTGCACAACGCAGCGGACACTTCGGATGACACGATAAAGTCAACCCTACAAGAGCTTAACGAAGACATAGAAGAAGAAATGAACCAATTGGAAATACCTTCTGACGAATTTATTGTTCCTAATTAG
Protein Sequence: MGDSADLKLNCPLCCNETFSSRELLFEHLSTTNGNLFCPICNNKFPSIVELIEHLSHKNCPETESSQAIKLTTITVEHETNSHCGQNDTINKSPNTLLSGQKLEATEDSDVNKMYVEIMRNQTQDLEFMKDGNNQYVIVSQDHEGIVTKQNNDGTISLTSVKDLKMEDADPMISGGEQETDDNQEGLYSCNTCGVSFTSVIDHIQIYHNDQDVVVEEPMDETENEQIPIEFEMVENEESSTAKQTSRRVITETGDIVEAPIEKKRNDEDLSVGKQKVLEKTTGPGSKRYMRMNNLCDSVVRDLKNDQKSQGHEHKVLVKDVMTKDGECIKMYHCIFCNVYVSSLSDFKQHPCKNSKYSCLQCPVKYDNAKSLCAHMKVHKVKTDDNSEVSETFECEICSTVFPTNKSLKLHKRMHDPVKARQIEAPRNSDFSELRYLCQICEKMIPIDYKTIHENSHKNEEKMLNCGICNKKFTSEEYLEMHMNVHNLDKAPLSKQDPALPYSCVYCDRRFARPHEKVKHERIHTGEKPHECEICGKSFRVSYCLTLHMRTHTGARPYGCPHCGKRFKAHSVYNHHLLTHSEVRAYKCPYCPKAFKTSVQLAGHKNSHTKPFSCTHCNRPFASLYAVRVHTETHARQNNLKFNCELCGASYARAFALKDHMKQLHCTDVKTEVLLTSQEEWSVHNAADTSDDTIKSTLQELNEDIEEEMNQLEIPSDEFIVPN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -