Cleg012747.1
Basic Information
- Insect
- Chesias legatella
- Gene Symbol
- -
- Assembly
- GCA_947359385.1
- Location
- OX375765.1:12204629-12207279[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0036 0.2 12.2 4.6 1 23 160 183 160 183 0.97 2 18 0.00021 0.012 16.1 2.6 1 23 192 215 192 215 0.96 3 18 0.0011 0.064 13.8 2.2 2 23 228 250 227 250 0.96 4 18 1e-05 0.00057 20.2 1.2 2 23 260 282 259 282 0.96 5 18 7.3e-05 0.0041 17.5 2.4 1 23 294 317 294 317 0.97 6 18 7.4e-05 0.0042 17.5 0.2 2 23 346 368 345 368 0.96 7 18 7.5e-06 0.00042 20.6 1.4 2 23 378 400 377 400 0.96 8 18 1.4 78 4.1 1.5 2 20 405 423 404 425 0.84 9 18 0.0017 0.097 13.2 0.7 2 21 430 449 429 452 0.94 10 18 0.011 0.62 10.7 0.3 2 23 461 483 460 483 0.95 11 18 7.2e-06 0.00041 20.7 3.4 1 23 488 511 488 511 0.94 12 18 0.0002 0.011 16.2 2.3 1 23 522 545 522 545 0.97 13 18 0.014 0.81 10.3 1.4 1 23 566 589 566 590 0.92 14 18 3.9 2.2e+02 2.7 1.6 2 23 596 616 595 616 0.78 15 18 0.014 0.78 10.4 2.8 2 23 622 643 621 643 0.97 16 18 1.7 96 3.8 1.0 2 23 650 673 649 673 0.91 17 18 0.025 1.4 9.6 0.2 1 23 709 731 709 731 0.97 18 18 0.079 4.5 8.0 2.0 1 23 737 760 737 760 0.97
Sequence Information
- Coding Sequence
- ATGACGATGATTAAAGAAGAACTGCCCGATCTTAAAATAAAGAGTGAGATAAAAGAAGATCCTGATGAACGCAAGGATCCGACCACCTATCTACCCCAGGAAGAGATGTGCTATGAAATTAAGAAGAAAAAGAAGAAGAAGAAAAAAAAGCAGGAAGACCCTTTCAAGGATATCGATGAAAAGCTGATGAAGAGTCGCAGTCCCGATATTACGGCTTTGGATCCTGATATCGGATGGTTGGATCCAGAAGTCACCATTAAAGTTGAGAATATTGAAGTTGATTTGGACATTAATGATTTCCATAACAATGATCAAGTTTCGGAATCTTACCATGAAGGAACCCTACTTGAACCTATAGTGAAACTCGAAGAACAAAACCGTGATGCAGTGTTGCTAACTTTTGAAAACGTCATCAGCAATAACCTCATAACTGATAAACTCCTATATGGAGAGAAGGTTATAGCCAACAACAAAACCCATTATTGCCAAGATTGCCACCTCATCTTCAAGACTGAAAAGTCTCTAGATGTACACCAGAAACGCTCCCACAAGCATTTCAGACAGTCATTTGAACACATTTGTGATCACTGCGGAATGTCATATGAATTCAAGAACAGCTTAGTCGCACACATCAGGAGAAAACATGGGCCCGATGCAGAGATAGAAGACCTAACCGAAATAACCTGTGACATATGTTCTCTAGTATTCAAAGGGAAATCAAGGCTATGTTTGCACATGCAACGAAAGCATGGAACCAACGATGAAAAATTCAACCTCAAATGTGAGTACTGTGGACTGACATATTCCAAACAGTCTAGTCTTATTGTACATAAACGTAGAAAACACATGAACAAACCCAATCCTAAATTAATGGAATGGTTCAGTTGTCCATTCTGTTCCAAAAGTTTCAACAAGAGGGAGACATATGTTAGACATATACAAAGAAACCACAGAGTCAAAGAAGGCGAAGAGAGCATTAGAAATGCAGAAGAAGAGTTTAAGAAGAATTACACTAATGAAAAAACTGGGGAATTGACTTGTAATCAGTGTCCGTTGGCTTTCGCATCTGTGGGTTATCTCAAGTGGCATATGAGAAGGAAACATAACAATTTAGTGTCAGATTTTCGCTTGAAATGTAAGATTTGCAATTTATCATACGCTCGGTCTGAAAGTCTAAAACGACATGTTAGAAGAAAGCATGATAGAGAAACATATTGTTTTGAGTGTAACAAGCAATTTGATAGTAGAGAAATATTTTTAAAACACACTCACTCTAAAGAAATTAAGGAATGCAACATTTGCGGTCTCATTTTTGGTAGTAAAGGTGGGTTGGCTAAGCATTTAAGGTGTACGCATAAACTGGATTCACCTATGACTGTGTATTGCCCCATTTGCAACGTTGGATTCTTCAGCAAACGCCAACTTAAGCCCCATTACAACCGAGTGCATTTAAAAGTGTCCTACACTTGCCAGTTTTGTGGTAAAGTTTTCAAAACTAAAGAGAGCTTTAGGAGACATGTTATGTTTAAACATCCAACAACTAAGGGTGACGATACTAAAAAACATCAGTGTGAAAAGTGTACAGAACGTTTTGCAGATGAGTTTGAGCTTTGCAAGCATATCAATATAGCCCATGCGGATAATGAGCTAGTGGTCATTAAGAAGGAGGACGAAGACACCAAAAATTTGAACATGTTTAAATGCACTAAATGTACACAGCAATATCCCGTTTGGGAGTCGCTTCGAGTTCACTTTGAGCAAATCCACCACATGACTGAAGAAGTGCAATGCCAAGTCTGTGGTTCCTTAATGACTCGGGGAGAACTCGTGAAACACATGAAACAACATGATGAAATTGAGGTTAAATGTAGATTCTGCGAGTTCAAAACTAAAAATCGCTCAGATATGACCCAGCACATGCTGCGACACAAGGATGCTGCAACAATACGTTGTGATTATCCAAACTGCAAATACAAAACGTTCTACGAAGATGCAATGTTGAAGCACAAGAGGAGACATCAAGAGATCGGTGTGAAATTACAATGTACCAGTTGTCCGTTCCAAACTATGAATAAATACATATTGAAATATCACGAAGAAGCACATGCAACGGGCAAGAAACGTTACCAATGTGATCAGTGTGAATATGCAACGATTCTGCCTGCTAATTTAGTTCAACATAAGTTCAAGCATTCCACGGAGAAGCGGTTTAAGTGTGACGTGTGCCCATTTGCAACTAAGTACAATACGTCTCTGCGTTTCCACGTTAGGAAGAAACACTGTGATCTCCCAACTATGAGTTAA
- Protein Sequence
- MTMIKEELPDLKIKSEIKEDPDERKDPTTYLPQEEMCYEIKKKKKKKKKKQEDPFKDIDEKLMKSRSPDITALDPDIGWLDPEVTIKVENIEVDLDINDFHNNDQVSESYHEGTLLEPIVKLEEQNRDAVLLTFENVISNNLITDKLLYGEKVIANNKTHYCQDCHLIFKTEKSLDVHQKRSHKHFRQSFEHICDHCGMSYEFKNSLVAHIRRKHGPDAEIEDLTEITCDICSLVFKGKSRLCLHMQRKHGTNDEKFNLKCEYCGLTYSKQSSLIVHKRRKHMNKPNPKLMEWFSCPFCSKSFNKRETYVRHIQRNHRVKEGEESIRNAEEEFKKNYTNEKTGELTCNQCPLAFASVGYLKWHMRRKHNNLVSDFRLKCKICNLSYARSESLKRHVRRKHDRETYCFECNKQFDSREIFLKHTHSKEIKECNICGLIFGSKGGLAKHLRCTHKLDSPMTVYCPICNVGFFSKRQLKPHYNRVHLKVSYTCQFCGKVFKTKESFRRHVMFKHPTTKGDDTKKHQCEKCTERFADEFELCKHINIAHADNELVVIKKEDEDTKNLNMFKCTKCTQQYPVWESLRVHFEQIHHMTEEVQCQVCGSLMTRGELVKHMKQHDEIEVKCRFCEFKTKNRSDMTQHMLRHKDAATIRCDYPNCKYKTFYEDAMLKHKRRHQEIGVKLQCTSCPFQTMNKYILKYHEEAHATGKKRYQCDQCEYATILPANLVQHKFKHSTEKRFKCDVCPFATKYNTSLRFHVRKKHCDLPTMS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -