Basic Information

Insect: Chesias legatella
Gene Symbol: Sall1
Assembly: GCA_947359385.1
Location: OX375779.1:5230574-5232352[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.094 5.3 7.8 1.8 2 23 189 210 188 210 0.96

2 13 4.9e-05 0.0027 18.1 3.8 1 23 216 238 216 238 0.97

3 13 0.011 0.61 10.7 0.2 5 23 270 288 268 288 0.95

4 13 1.6e-05 0.00091 19.6 2.0 1 23 294 317 294 317 0.97

5 13 6.2e-07 3.5e-05 24.1 2.0 1 23 326 348 326 348 0.98

6 13 6.7e-05 0.0038 17.6 0.2 1 23 354 376 354 376 0.96

7 13 5.5e-07 3.1e-05 24.2 1.2 1 23 382 404 382 404 0.98

8 13 0.00039 0.022 15.2 0.9 1 23 410 432 410 432 0.96

9 13 3.8e-05 0.0022 18.4 0.1 1 23 438 461 438 461 0.93

10 13 0.36 20 5.9 2.1 3 23 468 485 467 485 0.95

11 13 0.0022 0.12 12.9 2.1 2 21 492 511 491 514 0.89

12 13 0.068 3.8 8.2 0.1 1 23 520 545 520 545 0.89

13 13 0.00015 0.0082 16.6 1.7 1 23 551 574 551 574 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.094	5.3	7.8	1.8	2	23	189	210	188	210	0.96
2	13	4.9e-05	0.0027	18.1	3.8	1	23	216	238	216	238	0.97
3	13	0.011	0.61	10.7	0.2	5	23	270	288	268	288	0.95
4	13	1.6e-05	0.00091	19.6	2.0	1	23	294	317	294	317	0.97
5	13	6.2e-07	3.5e-05	24.1	2.0	1	23	326	348	326	348	0.98
6	13	6.7e-05	0.0038	17.6	0.2	1	23	354	376	354	376	0.96
7	13	5.5e-07	3.1e-05	24.2	1.2	1	23	382	404	382	404	0.98
8	13	0.00039	0.022	15.2	0.9	1	23	410	432	410	432	0.96
9	13	3.8e-05	0.0022	18.4	0.1	1	23	438	461	438	461	0.93
10	13	0.36	20	5.9	2.1	3	23	468	485	467	485	0.95
11	13	0.0022	0.12	12.9	2.1	2	21	492	511	491	514	0.89
12	13	0.068	3.8	8.2	0.1	1	23	520	545	520	545	0.89
13	13	0.00015	0.0082	16.6	1.7	1	23	551	574	551	574	0.98

Sequence Information

Coding Sequence: ATGGATTTTAAAATATGTCGCGTGTGCCTCGATAGAACAGCCACAATATCTCTGTTCGACAGACATGAGCGACATGGGGATATCTTCCAATACAAAGAGAAGATTATGAACTGTGTCTCCGTGCACATCGAAGAAGGCGATGGTTTACCCGATTCCATATGTGCCAGCTGCGCCTCCGAGGTCGCCATCAGCTACGATTTCAAGCAGAAGTGTGAGGCGTCTGACCGCGCACTGCGCTGCCTTTCTTTCCTCCAGACTACCGATACAAAACAAACAGGCATCACGGATGAAAACATCAAAACCGAAATTAAACATGAATCTGTACTTCAAGATATCCCGCCGTACGACGATGCGCAACTGTATGAGAATTATATGGACTTCTCGGATTTAAAATTCGATTCGGAATTAGATATTACTGTGGAAAGTAACCACGAACCTGAACCTAAAAAGAAAAAAGTTTATGAGAAAAAGCAAAAGGATCATACAACAAAAGAGGGAACCAAGAAAAAACAGCTGCAGGCACATTCACGTAAGTATAAAGAAAGGGTGCACACTGGCCCCATACAGTGTATGACCTGCGGCAGGGTACTCAAATGTCACTCTGCATATGAAGTGCACATGCGCGCACACACCAAGGAAAAACCATTCAGTTGCGACTTATGCAAGAAAAACTTTACAACCAAAAGTACTATGAAAACGCATATATACAGACACTATGGGATAGATGATAAGGAATTGAGGAAATCGAAACCCACGCCAGATTGGGATGGAAGAAAGTCTAGAAAAATTCCACTGATGCTCTGCATTGTATGCGGGCTGAAAGTAAATTCCAGATCTGCAATGGAGATTCACATGAGAACACACACCGGTGAGAGACCCTATTCTTGTACACAATGCAATAAAACGTACACTCTGAAAGGCACACTAAAAAGGCACATCGAACGTAATCATGATGAAATAAAACCACAATCCAATTTCGTCTGTGAACACTGTGGAAAAAGTTTTTATACAAGAACCAACATCATTGTCCACCTACGTACACACACCGGTGAGAGACCGTACCTATGTCCATTCTGTCCGAAAACATTTGCGCAACTTGCCTCCATCATTCGCCATAAACGTGTCCACACTGACGATAGACCTTATTCCTGTGATACATGTGGAAAGACATTCAGAGACAAATCATTAGTGAATAAGCACCAAAGTGTACATTCTGATGATAAAAACTTCATTTGTCATATCTGTAGTAAAGCCATGAAAACACGGTCGGCTTTAAAAGTTCACGTGAAGGGCCATAATAATAGGAGCCGGTTCATATGCAATGTATGCGGAATGGCTTTCACGTTCAAGGGTAACCTCAAGTTGCACGTTGGACGTATACATTCAGAAAAATCGGGCCTGTGTACCGTTTGCAACAAGATGTGTTCGGATCTAGAGGTTCACTTGAGAAGTCACAACGGTGAGAAACCGTGTATCTGCAAGTTGTGTAATCAAGGGTTCGCCACACAGCGGAGTCTGTCCCGCCACATTGGTTTTAAACACAGAGACGCTACCAAGTTTAAATGTTCCACGGGACAATGTGACAAGGCATTCCCTACAATAGCCATGCTCGAGTTCCACGTGCTGAAGGCCCACCTGGACAGCACGCCGTACGTTTGCCAACATTGTTCTCGCGGGTTCCTCCGCCCCAGTGACCTCTCGCGCCATCTCAAGATGAACCATATGGACAATACACTAGTTAAATCTCAATTTATTAAAATTGTAGAAACCGCCCCATAA
Protein Sequence: MDFKICRVCLDRTATISLFDRHERHGDIFQYKEKIMNCVSVHIEEGDGLPDSICASCASEVAISYDFKQKCEASDRALRCLSFLQTTDTKQTGITDENIKTEIKHESVLQDIPPYDDAQLYENYMDFSDLKFDSELDITVESNHEPEPKKKKVYEKKQKDHTTKEGTKKKQLQAHSRKYKERVHTGPIQCMTCGRVLKCHSAYEVHMRAHTKEKPFSCDLCKKNFTTKSTMKTHIYRHYGIDDKELRKSKPTPDWDGRKSRKIPLMLCIVCGLKVNSRSAMEIHMRTHTGERPYSCTQCNKTYTLKGTLKRHIERNHDEIKPQSNFVCEHCGKSFYTRTNIIVHLRTHTGERPYLCPFCPKTFAQLASIIRHKRVHTDDRPYSCDTCGKTFRDKSLVNKHQSVHSDDKNFICHICSKAMKTRSALKVHVKGHNNRSRFICNVCGMAFTFKGNLKLHVGRIHSEKSGLCTVCNKMCSDLEVHLRSHNGEKPCICKLCNQGFATQRSLSRHIGFKHRDATKFKCSTGQCDKAFPTIAMLEFHVLKAHLDSTPYVCQHCSRGFLRPSDLSRHLKMNHMDNTLVKSQFIKIVETAP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -