Cleg002428.1
Basic Information
- Insect
- Chesias legatella
- Gene Symbol
- ZIPIC
- Assembly
- GCA_947359385.1
- Location
- OX375791.1:2719508-2725307[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 1.7 95 3.8 0.3 1 23 55 77 55 77 0.85 2 29 0.63 36 5.1 0.2 2 23 105 127 104 127 0.91 3 29 0.00012 0.0069 16.8 4.6 3 23 152 172 150 172 0.96 4 29 0.083 4.7 7.9 0.3 2 23 176 197 175 197 0.96 5 29 0.15 8.3 7.1 2.3 1 23 202 225 202 225 0.96 6 29 2.1 1.2e+02 3.5 3.3 2 23 237 259 236 259 0.91 7 29 0.097 5.5 7.7 0.2 1 23 265 288 265 288 0.95 8 29 2.1e-06 0.00012 22.4 3.2 2 23 293 314 292 314 0.97 9 29 0.002 0.12 13.0 2.1 1 23 320 342 320 342 0.95 10 29 0.00017 0.0098 16.4 0.7 1 23 348 371 348 371 0.97 11 29 0.21 12 6.6 3.2 1 23 433 455 433 455 0.98 12 29 0.016 0.88 10.2 0.1 2 23 476 498 475 498 0.92 13 29 0.0059 0.33 11.5 6.9 1 23 521 543 521 543 0.97 14 29 0.071 4 8.1 0.1 2 23 548 569 548 569 0.95 15 29 1.9e-06 0.00011 22.5 1.5 1 23 573 596 573 596 0.96 16 29 2.9 1.7e+02 3.0 1.8 2 23 606 628 605 628 0.87 17 29 0.0014 0.078 13.5 2.2 1 23 634 656 634 657 0.96 18 29 0.31 18 6.1 2.3 2 23 662 683 661 683 0.96 19 29 9.7e-05 0.0055 17.1 4.7 1 23 689 711 689 711 0.97 20 29 1.2 66 4.3 0.6 1 23 721 744 721 744 0.94 21 29 0.21 12 6.7 1.7 1 23 807 829 807 829 0.98 22 29 0.039 2.2 9.0 0.1 2 23 857 879 856 879 0.96 23 29 0.55 31 5.3 5.6 1 23 902 924 902 924 0.94 24 29 0.041 2.3 8.9 0.4 2 23 929 950 928 950 0.96 25 29 0.0048 0.27 11.8 1.1 2 23 956 978 955 978 0.94 26 29 0.017 0.96 10.1 2.5 2 23 988 1010 987 1010 0.97 27 29 0.02 1.1 9.9 3.2 1 23 1016 1039 1016 1039 0.96 28 29 0.00026 0.015 15.8 1.2 1 23 1043 1065 1043 1065 0.98 29 29 0.001 0.059 13.9 1.6 1 23 1071 1093 1071 1093 0.98
Sequence Information
- Coding Sequence
- ATGTTTCTGGATTCCACAAATACACAACCCCTCAGAATACCGGACAAAGAGCGATCAAGAGGAGGCACCAGCGTATGGCAAATGACCATATGCGAGCGTCAGAACGCCGCTACATTTCTAGAGTACACGACCGTCAAGCCATTCTTTTACCAACAAGCCAGCTACAAGTGCTTCTACTGCAACGAGCTCTTCCCAGAAATCCAAGGTGTGCTCCAGCACACTGCCTCCCACACGACACCAGAAAGAACATCACTGCTCAAAGAGTATCTACGAAAAGGCAAAAGGGTGATCAAAGTTGACATATCCGAGCTATCTTGTAGACTGTGCCTACAAAAATATTCAGATTTGGACGATATCAGAAAACATTTAACAGCGGCGCACAAGAAGGAATTCAATTCATCCGGCAACGGCCTGATGGCGTACAACTTGAGCTTAAAAAACGGGATGCTAGCGTGCCATAAATGTGGGAAATGCTTCAACTCGTTCTTTCTACTCAACCAGCATATGAACGCTCATTTCAGCGTGGTCTGCGAGACTTGCGGGTTAGGATTCATGTCGCACCAGCGGCTGGTGAACCACAGGATAGTCCATCAGATCGGCGTACACAAATGCGATTCTTGCAACGACGTATTCCCGACGAAGCTCAAACTCCGTTACCATATCATCAAGAAACACGAAGTAACGAATCTAAAAAAGATGAAGCCGCTGAAATGCCCCCATTGCTTGGAGAGGTTTTCGGAACACTATAGGAAGATGTCGCATTTGAAGGAGGCGCACGGGATATCGTTTACGTTCGACTGTCAGGTGTGCAAAGCTGTTCTGCCGACGCGGAGGGCGCTGACGGAACACACGACTCGACTCCACACGCAGAAGATACAGTGTAACATATGCGGCAAGTGTTTCGGGACACATTCCTTGTTGAAGATGCATATGAGGGGGCATACTGGAGAGCGGAATTACTTCTGTACGATTTGTCGGAAGGCTTACATGCACGCGAAGACGTTGCGCCAACACATGGGCCTCCACGGATCTGTCTTGAAGTATGTCTGCTCGGAATGTGGGAGCGGTTTCCAGAACAGGAATGATTTTAATAAACATATGAAACAGTGGCATCCACAGTGGCAGTTTAAGACAATCGTCAAGAATTTCGACAATGAGATTAGCCAAAATAAAGAAGGAAAGAAACGCAAAGGACCCCTCACCAGCATCTGGGAACTCACCGTTTCCGAAAGAAACAATGCCGCACTCATCATCGAACACACTACAGTCAAGCCCTTCATCTACTGCAGATACTACTTCAAATGCTTCTTCTGCAAAGAGCACTACGCCGACATCACCTTGCTGCTCCAACACACCACAACACACCAGCAAACAGCCAAACTCTCCAAAGGAATCAAAACTATAAAGGTTGACATCAGCGACTTAAAATGTCGCATTTGCCAGAAACCTTTCGCAGACACCGACGCGATAAGAGAACACCTCGCGAACGAACACCAAAAAACATTCACCGAATCGGGTAACGGTATCATGGCGTACTGTTTAGCTCGGGAGAACAACCAGTTCTGCTGTCACCTGTGCGGAAAACTCTTCCATACCTTCATACTGCTCAATCGTCATATGAACGTGCATTTCAGCAACGCTGTCTGCGAAATTTGCGGTTCCTCATTCATGTCCTACCAGAGATTGATACAACACAAAGCTATACACGCGGGGGGCCACTCGTGCAGCGTCTGCAACAAGGTGTACTCGACCAGCGCGAATCTAAAAGCCCATATGGAGCGAAAGCACGACCGAAAACAAACGACAAAGATGTTGCGTTGCTCGATATGCTCGGAACGGTTCGCCGAGCACTTTAGAAAGCTCAAACATCTGAAAGAAATCCACGGAGTTACGTTCACATTCGAATGCGAAGTCTGCAAGTCTGTTTTTGAGAGCAGAAGAGCATTGACAACGCATACGAACAAGCATCATTCCGATAAGACGAAATGTGGCTTGTGTAAAAAAGCATTCAGTTGTATTACGACGCTTAAGCTACATCTGATCAGTCATACGGGAGAGAGAAATTACGCATGTTCGGTTTGTAATAAGACTTACAGGCACAAAAAGAGCATGAACCAACACATGAAGAATCATTTTGATGGGGACGGAACCCCGAAATGGTTCGCGTGTCCGGAGTGTGTCAGCGGGTTTTCGTGCAAGAATGATTTTAACGCGCACGTTAAACAGTGGCATCCAAAGACTTACTGTGCATCTTTTGACGCCTGCGGCACCTCTTGTCAGAATCTAAACCTATTCAAATACGAGTTGATAGGAAACCCAGAGAGCAGCATATGGCATATAACGGTCGCAGAACGCAACAACGCGGCCATATTCATTCGACATACCACAGTACGACCATTCATATTCATGGGATCCAGTTTCAAATGCTTCTTCTGTCTACAATACTTCTCTGATATACCGACGCTGCTTCAGCACACTTCAACCCACGCGACTGAAAATGAAGGTGCCATCCTCAAGAAACACATCCCGAGTGGAAAGAGAACGCTTCAAGTCGACATTTCTAACCTAAAATGTAGAATTTGCAACGATGTTTTTCCAAATTTGGACGCCATAAAAATACATTTACAGACAAACCACGAAATCAGATTCCTCGCTGCTGGCAACGGGATGACAGAGTACAACTTAAGAGCAGTAGACGGTATGTTTTCATGTCACCACTGCGCAAGCAGTTTCCACAGTTTCACACAGCTCAACACTCATATAGGCGGCCATATTGGAAAAGTGGTCTGCGAAAACTGCGGCGCGGCTTTCCTACACCAGCGCTTACTGATCAAACACAAAGAATCCCACCTACAAAAACGGCTCAAATGTAAGTTTTGCGACACATTATTCATCAAAAGAAGCCAACTTAGATACCACACAGAAATCGTGCACAAAGGAAGAGAACGGGTGAGGCCTAAAAAGTGTCCAGAATGTTCTGAGACATTCAAAGAACACTACAGTAAGATGCTCCACCTTAAAACAGTCCACGGAGTCACAAAAACGTTCCAGTGTCATTTGTGTAAAGTGATATTTAGCATGCGAAGAGCTTTGACGGAGCACGTCGCTAAATGCCACACGGAGAAATTCAAATGTGGCGTGTGTCTTAAACGCTTTGGAACAGAGTACAGGCTGAAACAACACATGCGGGGACATACAGGGGATAAGAATTTCCCGTGTCCTGTGTGCAGGAATACGTACATGCACAAAATGACACTGAAGAAACATATGATAATTCACGATTCATAG
- Protein Sequence
- MFLDSTNTQPLRIPDKERSRGGTSVWQMTICERQNAATFLEYTTVKPFFYQQASYKCFYCNELFPEIQGVLQHTASHTTPERTSLLKEYLRKGKRVIKVDISELSCRLCLQKYSDLDDIRKHLTAAHKKEFNSSGNGLMAYNLSLKNGMLACHKCGKCFNSFFLLNQHMNAHFSVVCETCGLGFMSHQRLVNHRIVHQIGVHKCDSCNDVFPTKLKLRYHIIKKHEVTNLKKMKPLKCPHCLERFSEHYRKMSHLKEAHGISFTFDCQVCKAVLPTRRALTEHTTRLHTQKIQCNICGKCFGTHSLLKMHMRGHTGERNYFCTICRKAYMHAKTLRQHMGLHGSVLKYVCSECGSGFQNRNDFNKHMKQWHPQWQFKTIVKNFDNEISQNKEGKKRKGPLTSIWELTVSERNNAALIIEHTTVKPFIYCRYYFKCFFCKEHYADITLLLQHTTTHQQTAKLSKGIKTIKVDISDLKCRICQKPFADTDAIREHLANEHQKTFTESGNGIMAYCLARENNQFCCHLCGKLFHTFILLNRHMNVHFSNAVCEICGSSFMSYQRLIQHKAIHAGGHSCSVCNKVYSTSANLKAHMERKHDRKQTTKMLRCSICSERFAEHFRKLKHLKEIHGVTFTFECEVCKSVFESRRALTTHTNKHHSDKTKCGLCKKAFSCITTLKLHLISHTGERNYACSVCNKTYRHKKSMNQHMKNHFDGDGTPKWFACPECVSGFSCKNDFNAHVKQWHPKTYCASFDACGTSCQNLNLFKYELIGNPESSIWHITVAERNNAAIFIRHTTVRPFIFMGSSFKCFFCLQYFSDIPTLLQHTSTHATENEGAILKKHIPSGKRTLQVDISNLKCRICNDVFPNLDAIKIHLQTNHEIRFLAAGNGMTEYNLRAVDGMFSCHHCASSFHSFTQLNTHIGGHIGKVVCENCGAAFLHQRLLIKHKESHLQKRLKCKFCDTLFIKRSQLRYHTEIVHKGRERVRPKKCPECSETFKEHYSKMLHLKTVHGVTKTFQCHLCKVIFSMRRALTEHVAKCHTEKFKCGVCLKRFGTEYRLKQHMRGHTGDKNFPCPVCRNTYMHKMTLKKHMIIHDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -