Cleg002423.1
Basic Information
- Insect
- Chesias legatella
- Gene Symbol
- -
- Assembly
- GCA_947359385.1
- Location
- OX375791.1:2669150-2677563[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 3 1.7e+02 3.0 0.5 2 23 28 50 27 50 0.90 2 26 0.75 43 4.9 0.3 2 23 75 97 74 97 0.91 3 26 0.00065 0.037 14.6 0.1 1 23 119 141 119 141 0.98 4 26 0.00082 0.047 14.2 1.3 2 21 146 165 145 166 0.92 5 26 0.0048 0.27 11.8 1.6 1 23 199 222 199 222 0.95 6 26 0.00012 0.0066 16.9 1.0 1 23 229 252 229 252 0.96 7 26 5.3 3e+02 2.2 0.1 2 23 342 364 341 364 0.92 8 26 0.0047 0.26 11.9 0.5 2 23 391 412 390 412 0.96 9 26 1.9e-06 0.00011 22.5 1.0 1 23 416 439 416 439 0.95 10 26 0.61 35 5.2 0.5 1 22 443 464 443 464 0.91 11 26 1.7 96 3.8 0.4 3 23 473 494 471 494 0.95 12 26 4.8e-05 0.0027 18.1 0.3 1 23 501 524 501 524 0.96 13 26 0.0014 0.079 13.5 2.1 2 23 530 551 529 551 0.92 14 26 2e-05 0.0011 19.3 1.6 1 21 557 577 557 578 0.95 15 26 1.9 1.1e+02 3.7 0.2 2 23 633 655 632 655 0.93 16 26 0.015 0.84 10.3 0.8 1 23 681 703 681 703 0.98 17 26 7.7 4.3e+02 1.7 0.4 1 17 707 723 707 730 0.73 18 26 0.5 28 5.5 0.1 1 21 734 754 734 755 0.94 19 26 0.029 1.6 9.4 1.5 1 23 762 785 762 785 0.93 20 26 0.00044 0.025 15.1 1.8 1 23 792 815 792 815 0.97 21 26 1.9e-05 0.001 19.4 0.8 1 23 820 842 820 842 0.96 22 26 2.3 1.3e+02 3.4 0.6 3 23 873 894 871 894 0.88 23 26 0.1 5.8 7.6 0.1 2 23 921 943 920 943 0.93 24 26 0.028 1.6 9.4 0.5 2 23 970 991 969 991 0.96 25 26 0.05 2.8 8.6 0.2 1 23 995 1018 995 1018 0.97 26 26 0.003 0.17 12.4 0.4 1 21 1022 1042 1022 1043 0.94
Sequence Information
- Coding Sequence
- ATGTCCATCGCAAGACAGAACGCGCGCATGATTGTTGAGAATTCAACAGCATATCCGTTTAGACTGCCTGAGAGTACACTGATGTGCGTTTATTGCTGCGAGAGTTTCCCAGAAGCGATGTTGTTCAGACAGCACATGGACGATGAGCATGCCAACTTCAAAGCTCACCTCGCTTTCGCGCACATCTCCGAAGGACACCTCAAAGTTGATATCACACATTTGCGGTGTAGGAATTGCACCTCATCGTTCAATAACCTCCGAGATGTAGCCGTGCATTTGACCGAAGTCCACGACGTTAAAATAGATCTCGACGTCGATTTGGGGCTGCAGCCGTTCCGACTGGAAAAAGATCGGTTCGTGTGTCCCATTTGCGAACGAAAGGCTGCCAACCTCCGTGCGTTGAGCAGACACATACAGAAGCACTATCGACAGTGCATATGCGAGCATTGCGGGAAAGCTTACGCGACGAACACTTCTCTCACTTACCACGTGAAGTACTCGTGTTTCAAAGACGGACAGAGACGATGCAGAAAGTGTAAGATTGTCGTGCATTCCATTGAGGAGCACTTGAAACAGTCTGTCAGGTGCAGACAACACATATGCAACGTGTGCGGAGAGAGGTTTGCAACGTGGTTCAAGAAACACGAACACATGGAGATGGTACATTCGTTGCCGAAGAAGACCTTCCCGTGTCCCGAATGCGGGAACGTTTACCCTTCCAACCACCATCTCAGAACTCATTTCAACATCGCCCATACGGATGACTATCTTGAGTGCGTGCACTGCGACCACAGAACACACGTGAAAAGGAACGCTGAGATTGTGTTAAAGTACTCGACGCTATATCCGTTCAGGGCGCGAGGCAAATCATTGATTTGCGTTTACTGCTGCGAAAATTTCCCGGACGATGACCCGGACGAATTCAGACGCCATGTGGACATGACGCACGAAACTGTTGATTTATATACAGCGTTCGCACACGTTCGCAGCGGGGACTACCTGAAAGTCGATTGCGTTAACCTCAAATGCAGACTGTGTGCGGAGTTTTTCGAAACAATCGCCGATATATTGCAGCACCTTACGATCTTCCACGATAATAAAGATATCAAGGATATAAGGCTGGATTACGATGTCGCCATGCACCCTTACCGCCTGATTAAAAACAAATTATACTGCGTCGTTTGCAATATGAAGCTGCCGACCTTGACCAAGCTGACGAGGCATATGTCCACCCACTACGCGGATTACGTTTGCGATGTGTGTGGAAAAAGTTACACGAACGCCGAAAACCTGAACCATCACGTCAAATTCAACCACACCGGGAAATTTATATGCAGAAGGTGCAGTCGAGAATTCCCCACGAAAGAAGAGAAAAGTTTACACGTGAAAACATCGAAGAGATGCTGGGGATTTGGTTGCGTACATTGCGGGGATAGATTCGGCTCTTGGGAGTTGAAGAACAGCCATTTGATCAGCGAGCACAACGTCGAGGCGACCACCTACCCGTGTCCCGACTGCGGGAAAGTTTTCGCGTATCGAAAAAAGTTCTACGATCATTATGTCACCGCGCATTCGGATGAGGCGCTAGTGTGCTCCTGTTGCGGCAAGAAGTTCAGAAACAAAACGTTGCTCGAAACGCATCAGGTGATAcacacgggtgaaaagcagtttcgttgcaaggtgtgtttgaaggcgttcactaggaagaagtctctgaagacacacatGTTGAGAGGGAAAACGTTGATGTGCGTTTACTGCTGCGACGAAATCGAAGATCCGGATGAGTTCAGGTGCCACATCGACACGACGCACAAGACGGTCGATCTTTACACCGCATTCGCTCACACCAAGTGCAGAGACAGGGACTATCTCAAGGTCGACTGCGTCAATCTCAAATGTAGACTGTGTTGGCAGCCCTTCGGTACCGTCGCTGAGATAGCGCAGCATCTCAAGGGATGCCACGACAATGACGACGTCAATCAAATGAACTTGGACTACGAAGTTGGCTTGCATCCGTATCGACTGGTCAAAGGCCATTTTTACTGCATGGTGTGCAACTTGAAACTACCCACAGTGACCAAACTCACGAGGCACATGTCCTCCCATTTCGCGGACTACGTCTGCGATGTTTGCGCCAAGAGCTATTTGAACGTGGAAAGCTTGAGGTTCCACGTCAAGTTTAGCCACGCGGAGAACTTTGTCTGCAGAAAGTGTTTGGAAGAATTCGCCTCGGCTGAAGACAGACGGGAACACCTGAAGGTTTCAACGCAATGTTGGGGATTTGCGTGTGTTCATTGCAAGGAGAGATTCTCCTCTTGGGAGCGAAAGCAAAAGCATTTGGTGAGCGTGCACAACGTCCAGGCTTTGACGTATCCGTGCCCCGACTGCGGGGTCGTATTCAAGTCTAGAGTACGTTTTTACCACCACTACAACAAGAATCATTCCGATCTCGCtcacatatgcacgtattgtggcaagaaattcgggaataaaggcttgctcgaggaacaccttgtgacccacaccgCTCGCGATCAGGCGAAACGGAACGCTGAGGTCGTGTTACAGTATTCCACACTGTATCCGTTCAGGTTGCGAGGGAAAATATTAATTTGCTCTTACTGCTGCGACGAATTCGAGGATCCCGTCGACTACAGGCGTCACATGGATCAGACGCACGAGAAAGTCATTCTTTACTCTGCGTTCGCGCACACCGGCAGAAACCGCGACTACATAAAGGTGGACTGCGTCAACCTCAAGTGCAGGATATGTGACGCCCCTTTCGACACAGTCGTTGAGGTAGCTAAACATCTCAAAGATACTCACGTGAACGATGATATCAAAGAGTTGGACTTAGATTTCGAAGTGGGCATGCATCCATACCGTTTGATTAGAGATAAATGGTCCTGCCTTATGTGCAATGTCAAATTACCGTCGTTGACGAAGCTCCGGAGACACATGTCGTCCCACTACGCGGATTATGTGTGCGACATTTGTGGCAGTAGCTACTTGAAGATTGATAACTTGCAGTATCACGTCAAGTCGATGCACTCGGGCAAATACCCTTGCAGGAAATGCTGGAAGGTTTTCGCCACAAAGGAAGATAAAAAACAACACGTCAAATCGTCTCCGCAATGCAAGATTGTGCCCTCGGTGTATCAGGAAATGAGTAACTAG
- Protein Sequence
- MSIARQNARMIVENSTAYPFRLPESTLMCVYCCESFPEAMLFRQHMDDEHANFKAHLAFAHISEGHLKVDITHLRCRNCTSSFNNLRDVAVHLTEVHDVKIDLDVDLGLQPFRLEKDRFVCPICERKAANLRALSRHIQKHYRQCICEHCGKAYATNTSLTYHVKYSCFKDGQRRCRKCKIVVHSIEEHLKQSVRCRQHICNVCGERFATWFKKHEHMEMVHSLPKKTFPCPECGNVYPSNHHLRTHFNIAHTDDYLECVHCDHRTHVKRNAEIVLKYSTLYPFRARGKSLICVYCCENFPDDDPDEFRRHVDMTHETVDLYTAFAHVRSGDYLKVDCVNLKCRLCAEFFETIADILQHLTIFHDNKDIKDIRLDYDVAMHPYRLIKNKLYCVVCNMKLPTLTKLTRHMSTHYADYVCDVCGKSYTNAENLNHHVKFNHTGKFICRRCSREFPTKEEKSLHVKTSKRCWGFGCVHCGDRFGSWELKNSHLISEHNVEATTYPCPDCGKVFAYRKKFYDHYVTAHSDEALVCSCCGKKFRNKTLLETHQVIHTGEKQFRCKVCLKAFTRKKSLKTHMLRGKTLMCVYCCDEIEDPDEFRCHIDTTHKTVDLYTAFAHTKCRDRDYLKVDCVNLKCRLCWQPFGTVAEIAQHLKGCHDNDDVNQMNLDYEVGLHPYRLVKGHFYCMVCNLKLPTVTKLTRHMSSHFADYVCDVCAKSYLNVESLRFHVKFSHAENFVCRKCLEEFASAEDRREHLKVSTQCWGFACVHCKERFSSWERKQKHLVSVHNVQALTYPCPDCGVVFKSRVRFYHHYNKNHSDLAHICTYCGKKFGNKGLLEEHLVTHTARDQAKRNAEVVLQYSTLYPFRLRGKILICSYCCDEFEDPVDYRRHMDQTHEKVILYSAFAHTGRNRDYIKVDCVNLKCRICDAPFDTVVEVAKHLKDTHVNDDIKELDLDFEVGMHPYRLIRDKWSCLMCNVKLPSLTKLRRHMSSHYADYVCDICGSSYLKIDNLQYHVKSMHSGKYPCRKCWKVFATKEDKKQHVKSSPQCKIVPSVYQEMSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -