Basic Information

Insect: Chesias legatella
Gene Symbol: -
Assembly: GCA_947359385.1
Location: OX375792.1:1644585-1648871[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0002 0.011 16.1 0.7 1 23 210 232 210 232 0.97

2 15 6.2e-06 0.00035 20.9 0.9 1 23 236 258 236 258 0.97

3 15 0.0082 0.46 11.1 0.0 1 23 263 286 263 286 0.95

4 15 0.013 0.75 10.4 1.2 1 23 292 314 292 314 0.97

5 15 1.6e-07 8.9e-06 25.9 3.9 1 23 320 342 320 342 0.97

6 15 9.6e-05 0.0055 17.2 2.1 2 23 347 368 347 368 0.97

7 15 7.5e-05 0.0043 17.5 2.1 1 23 374 396 374 396 0.97

8 15 3.6e-05 0.002 18.5 0.3 1 23 402 424 402 424 0.98

9 15 0.14 7.8 7.2 6.6 1 20 430 449 430 452 0.88

10 15 0.0083 0.47 11.1 0.3 1 23 457 479 457 479 0.95

11 15 0.00015 0.0083 16.6 5.1 3 23 487 507 486 507 0.99

12 15 8e-06 0.00045 20.6 1.5 1 23 516 539 516 539 0.97

13 15 0.009 0.51 11.0 0.7 1 23 545 567 545 567 0.97

14 15 0.00034 0.019 15.4 4.9 1 23 572 595 572 595 0.97

15 15 1.9e-06 0.00011 22.5 0.5 1 21 601 621 601 622 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0002	0.011	16.1	0.7	1	23	210	232	210	232	0.97
2	15	6.2e-06	0.00035	20.9	0.9	1	23	236	258	236	258	0.97
3	15	0.0082	0.46	11.1	0.0	1	23	263	286	263	286	0.95
4	15	0.013	0.75	10.4	1.2	1	23	292	314	292	314	0.97
5	15	1.6e-07	8.9e-06	25.9	3.9	1	23	320	342	320	342	0.97
6	15	9.6e-05	0.0055	17.2	2.1	2	23	347	368	347	368	0.97
7	15	7.5e-05	0.0043	17.5	2.1	1	23	374	396	374	396	0.97
8	15	3.6e-05	0.002	18.5	0.3	1	23	402	424	402	424	0.98
9	15	0.14	7.8	7.2	6.6	1	20	430	449	430	452	0.88
10	15	0.0083	0.47	11.1	0.3	1	23	457	479	457	479	0.95
11	15	0.00015	0.0083	16.6	5.1	3	23	487	507	486	507	0.99
12	15	8e-06	0.00045	20.6	1.5	1	23	516	539	516	539	0.97
13	15	0.009	0.51	11.0	0.7	1	23	545	567	545	567	0.97
14	15	0.00034	0.019	15.4	4.9	1	23	572	595	572	595	0.97
15	15	1.9e-06	0.00011	22.5	0.5	1	21	601	621	601	622	0.95

Sequence Information

Coding Sequence: ATGTCCGATCCTGATATGGGCGATGTTAAATTAAGTGTCCGTAAGGATTACTGCTCGCGAAAGCGATACCCTTGGTGTAGAACGTGCCTCGCAGCCGATGTAAAAATGTATATCATCAGAAACAAGCAACTTCTAGAATTATACGAAAAACTTACGAGCTCAAAGTTCATCACTGATGATGGATCACCTCAAACAATATGCTACATTTGTTATTCACAGCTGCAGAGATCCTACAAATTCTCCACCATGGCGCATAAATCACAAGAAATCCTTAACAATCTACTGCGACTCGGTGTTGAGGTTCAAAAAATAGTAATCCGGCCAAACCAGGGAATTGCACGGAAACTGATGGTTTGCACTCTTCCACCCATGTCTATTGATGGATATGGAAATGAGGATCCAGAATTGGCCGCTAACGAAGAAATGGTAACAGAAAACTTCTACGAAGTTGAACTTAAAGATTATGTAATGGGAGGCAATGAAAATGTATCATTCTATCAAGCTTTGGACTCTGAGATACCAGTTGTTAAAGAAGAAATAGTAAAATATGAATCAGAAAACAATATGAACTTAGATACAGATATGGAATCTACACAAATAAGTCAAAATGAGAATGGTGAAGAGTCATATGCCTGCGAAAAATGTGATAAAACATTCAGTTTATACACTGGCTTACTGTCGCACAAGAGGGCCCACAAGAAGGCATATGCCTGTAAGCAGTGTAGTGAAACATTCCCCAACAAAACATCTTTGAAAAGTCACATGATAAGTCACGGAAAAGAGGTATATGTATGCGATATTTGTGAGAAAATATTCTTAATAAAAGAATCCTTGGCAAAACACATACTGCTTGACCACATTGAGGAAAAGCCATATAAATGTAACGAATGCATGAAACCATTCATTACAATGTGCAAACTCAAGGAACATGCAATAATACACAGTAGTGAAAAGAAATTTGCTTGTGACCAATGCGATAAAGCATTTAAACACAGATATAACTTGAAGAAACACATTAAAACACACAACAGTGAAAACTATTGCAAAGTTTGCAACAAAACATTTGAGCTATCGTACAAATATAAACAACACATGCTAACGCACACAGGAGAAAGTCCACACACCTGTAATTTATGCAGCAAGATATTCGATAATAATGAGGATTTGAAAACACACCGAATATCCCACACCAAAGTGAAACTTTACTCGTGTACGGAGTGTAATAATTCATTCGCTGAAAAATATGAGCTGGAAAGTCATATGGATATACACAACGGAGAAAAGCCATATAAGTGCAATCAATGTAACAAATCGTTTACCCATATACTATCGCTGCAATGTCATATGGTGTGTCACAGTGAGAAACCGTTCGTTTGTGAGATATGCGGTAGGGTTTTGATGTCCAGACACAGATTGGTACAACACACCGTTATCCACAGTAAGGAGAAACCACACGGTTGCACCAAATGCAATAAGAAATTCAAATCCATTACCAATTTGCACAAACACATGTTAAAACACACCAAAATGTCCAAGGAAATGCCTTTTGTGTGTACAACGTGCGAAGGGGCATTTAGAACAAAGTATAATCTGCAAAAACACATCAAATCGAGGCATCCGGAGGTAATGCCATACGCATGCAGTATATGTTATCGGACATATAACAAGAAATCCATTTGGGAGAAACATATGCTGTTGCACGAAGGCAATTCATATAATTGTCAACAGTGCAATCATTCGTTTACAAACATAGGTCAATTGCACAGGCACCTTAAGAGAATACATGGAGAAAAGCCAGTTTATGCCTGCGCTAAGTGCAGAAAGTCTTTCAGCGACCCCAGAAATTTGAGAAAACACATGAAGCTAATGGAGGCTATGGATCCGACACATTCCATAACTTAG
Protein Sequence: MSDPDMGDVKLSVRKDYCSRKRYPWCRTCLAADVKMYIIRNKQLLELYEKLTSSKFITDDGSPQTICYICYSQLQRSYKFSTMAHKSQEILNNLLRLGVEVQKIVIRPNQGIARKLMVCTLPPMSIDGYGNEDPELAANEEMVTENFYEVELKDYVMGGNENVSFYQALDSEIPVVKEEIVKYESENNMNLDTDMESTQISQNENGEESYACEKCDKTFSLYTGLLSHKRAHKKAYACKQCSETFPNKTSLKSHMISHGKEVYVCDICEKIFLIKESLAKHILLDHIEEKPYKCNECMKPFITMCKLKEHAIIHSSEKKFACDQCDKAFKHRYNLKKHIKTHNSENYCKVCNKTFELSYKYKQHMLTHTGESPHTCNLCSKIFDNNEDLKTHRISHTKVKLYSCTECNNSFAEKYELESHMDIHNGEKPYKCNQCNKSFTHILSLQCHMVCHSEKPFVCEICGRVLMSRHRLVQHTVIHSKEKPHGCTKCNKKFKSITNLHKHMLKHTKMSKEMPFVCTTCEGAFRTKYNLQKHIKSRHPEVMPYACSICYRTYNKKSIWEKHMLLHEGNSYNCQQCNHSFTNIGQLHRHLKRIHGEKPVYACAKCRKSFSDPRNLRKHMKLMEAMDPTHSIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -