Cleg002383.1
Basic Information
- Insect
- Chesias legatella
- Gene Symbol
- -
- Assembly
- GCA_947359385.1
- Location
- OX375791.1:2280845-2285764[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.22 12 6.6 3.6 1 23 30 52 30 52 0.94 2 31 0.001 0.059 13.9 0.1 3 23 81 102 79 102 0.96 3 31 0.0009 0.051 14.1 0.2 2 23 123 145 122 145 0.95 4 31 0.00027 0.015 15.7 5.2 1 23 150 173 150 173 0.98 5 31 5.1 2.9e+02 2.3 5.6 1 23 177 200 177 200 0.96 6 31 0.09 5.1 7.8 1.7 2 23 203 225 202 225 0.96 7 31 2.8 1.6e+02 3.1 1.3 2 19 232 249 232 252 0.89 8 31 0.00029 0.016 15.7 4.9 1 23 301 324 301 324 0.97 9 31 1.7 98 3.8 0.2 2 23 353 375 352 375 0.85 10 31 0.025 1.4 9.6 0.2 1 23 396 419 396 419 0.92 11 31 5.4e-06 0.0003 21.1 1.1 1 23 424 447 424 447 0.96 12 31 0.00029 0.016 15.7 0.0 1 23 452 475 452 475 0.97 13 31 0.013 0.73 10.5 1.2 1 23 480 503 480 503 0.96 14 31 0.0011 0.061 13.9 2.4 1 23 507 530 507 530 0.97 15 31 0.15 8.4 7.1 0.3 2 23 537 558 536 558 0.96 16 31 0.00059 0.033 14.7 2.4 1 23 564 586 564 586 0.96 17 31 0.2 11 6.7 0.4 3 23 630 650 628 650 0.96 18 31 0.7 40 5.0 0.0 3 23 679 700 677 700 0.81 19 31 0.045 2.6 8.7 3.3 2 23 721 742 720 743 0.94 20 31 0.00055 0.031 14.8 3.1 1 23 748 771 748 771 0.96 21 31 0.0042 0.24 12.0 2.3 1 23 776 799 776 799 0.95 22 31 0.0079 0.45 11.1 5.5 2 23 802 824 801 824 0.95 23 31 4.8 2.7e+02 2.4 1.4 2 20 831 849 831 851 0.93 24 31 0.49 28 5.5 0.8 1 23 907 930 907 930 0.97 25 31 0.014 0.81 10.3 0.1 2 23 1005 1027 1004 1027 0.91 26 31 5.6e-06 0.00032 21.0 0.4 3 23 1034 1055 1032 1055 0.95 27 31 0.00046 0.026 15.0 3.4 2 23 1060 1082 1059 1082 0.95 28 31 1.9 1.1e+02 3.6 0.2 1 23 1087 1110 1087 1110 0.96 29 31 0.013 0.75 10.4 6.4 1 23 1114 1137 1114 1137 0.97 30 31 0.026 1.5 9.5 1.8 2 23 1144 1165 1143 1165 0.95 31 31 2.1e-06 0.00012 22.4 1.3 1 23 1171 1193 1171 1193 0.99
Sequence Information
- Coding Sequence
- ATGGTCACTGCCAATGAACTCAGGCGGAGGAACCTCCAAACGTTATTCAACAACACTTCAGTGTTGCCATTCAAATGGCGTGGCAAATATTTGTGTTTCTTCTGTGGTATACACAAAGAAAACTATTCTGATCTCAAAAGGCACACTAGAACTCACATTCCCTGCTCCCTCACAGACCGAGCCATGAAACTCATGAAAGGACAAGAGAGTGAAACTAAAATAGATGTCTCCAATATCATTTGCAATGTTTGTTCAATGTCGTTTGTTAATACAGATGATTTGTTATCACATTTGATAACTACCCACAATCTTTCTTATAATAGACATGTGTCCCTAACGTTAGCTTCGTATCGATTGGCTGATCTCAAATGCCTCGTTTGCGGGGAGTATTTCAAAATGTTCGTTAATCTCGTCCGCCACATGAATCTCGAGCACCCAGAGAATTGTTTTCAGTGTGATATTTGTCACCAGAATTTCAATAAGAAGCGTGATTTATCCCATCATTTGAGAATAAATCATAAGGATGAATACAATTGCTCTAAATGTTCTCAACAATTTTCGTGCTTCTCGAAGCTTCTTCAACATAAGATGAAAGAACACAGTTCGAGTTGTAACGTCTGCTTCCAAACGTTTCCAACGTATCAGAAACGATTGAGCCACATGAAGAGGGAACACGACGTTGAGGACGGTGGAGAATGCGGGTTTTGTAACAGAAAGTTTTACGCAAAACACACTTTCCTAGACCATGCGACGAAATGTAAAGCGTCTCAGCCGAAAGATGAAACACCTATCGTCATCGACGAGGAGGAGAGGGGTCAGAACTTGAAAGATCTCCGAGAAAGTATAGCACACGTCATCAACATGACCACCGCTATGCCCTTCAAGTTCTTCCATAGCAAGTTTAGATGTTTCTACTGTCCGAAAGATTTCACCAAATGCAGCGATCTGAGAAACCACACGACGACCGAACATCCGATTTGCGACACGACATTCAAAGCCATGAAGCTGCGAGGTCGCTCCGACGGTGTTAAAATCAAAGTCGACACATCTTCCCTCTACTGCAAAATATGCTTCGAGAGATTCGATGATTTTGTCAATTCGGTCAACCATTTGGAAATTGAACACAAGACCGTCATAAAGAAATGCTTTGATGTCTTCCAACCTTTTAGTTTGATTCACGATAAGTTTCCTTGTCCGTTCTGCAGCGAAGAGTTTAGATATTTCCGATTACTACTCAATCACGTCAGCGCCGGCCACTCTGGCAATGAATATATCTGTACGTTTTGTGGCAAATCCTTTCGTACGTATCCCAATTTACGTGCACACGTGTCTCGTTACCACTCGACCAATAGTTTCGTATGTAGCATCTGTAACTTAGGTTTCCCCACCGCGAATGGGTTGAAGTTACACATGGCGAAAGATCACGGCACCAAAGTCTTTAACTGTCAGCAGTGCTCCGATAAGTTTGTCTCGCAGTACCAAATGATGAGGCACATCCTTAAAGTCCACGACGGCGGTCACAAATGCAGTTACTGCGGGTTGGCTTTCATCAAGTATTCGTATAAGATCAACCACATTAGAAGGTTGCACCTCAAGGAGAAGAATGTTCAGTGTGCTCTTTGTAACGAGAGGTTTTTCGACGGGAATCGCCTAAAGTTACACATGGTTAGGCATGTCGGCGAGCGGTTGTTCCGTTGCGACCACTGTGGGAAGAAGTTCCTTCGGAAGAGGAATCTCAGGGGCCACGTGGCTCTCCATCTTAAGAATGACAATGAAACACCCGCCCCCACGGTCGACCGAATAACGTCCGGCCGGAGGAGGAGAAACTTGAAAACTCTATTCGATAACACAACAATTATACCTTTCAAATGGCGCGGATGTAGCATATGCTTCTATTGTAGCGTACCCGTCGCAGATTACACAGAATTCAGAAAACACACCAAATCTCACGGTGTCTGCAATATCAATAGTCACGCCATGAGAAAGGTGAAAGGAAACGGGCTATCCGTTAAAGTTGACGTTTCAGAGATAGCCTGCGAAATTTGTGAGAGACCATTCAAAAACCTACAAGTGATAGTGGAACATTTGATAAACGAACACAACTTGAAGTACGATAAAGAAATTTACAGTGAAATCGAAGAGTACAGACTGGTCGATCTGCGTTGCGTGCAATGCGATCAGCAGTTCGTGTCTTTCACACATTTGGTCTCACACGCCAATAAGCATCACCCACTCAATAATTACGTCTGTGATCACTGTGGACGCCAGTTCAGTAAGAAGAGAGATATGAAAGGTCATTTGAATTACTACCACCGGCTTGGAGGGTACGTTTGCGAGCAATGCGGACTAGAATGTAAGAGCTATTTTAAGTTGAAAGCGCACATGGCACACGCACATTTAACCCGATGCCACATCTGCGGTAAGAAATTCAAGTTCTTGAATCGGTTGTTCCATCACGTCAAACTGGAACATCCCAGCGATGAGAATAGAACTTGCAGCTTTTGCATGAAAGAGTTCCACTCCACCATGGGCCTAAAAGTCCACATGTTTAAGTGCAAAGTGAGATCTCTTTCGACGGTCGAAAGCGACGTTGCGATCCCCGAGACCAAGGATTCTTTAAACCAGTCGAGGACGCACGAGCAAATTGTACGGATCCGCCAAAACATAGCCTGCGTCCTCAATATGTCGACGGCCATACCTTTCAGGTTTAGAGTCAAATTCTCATGTTTTTACTGTTCCCTCAAGATCGGCGATTACGAAGTGCTCAAGCAGCACACACGAACGGAACATCCCGTTTGTGATGTCAAAATGAAGGCGCTGAAAACGTGTAAAGGAAAACGGACGTTCGTACGAGTGGACATAGCGTCTCTCGCTTGTAAACTGTGTTCGCTCCCGATGCCGGACTTGAAGCACTTCATCGAGCACGCCATTTCCGCTCACGACGCAGACTACGACAAATCCGTTAGCCTGGAGACTTGCTTCGAGCCGTATCGTTTAGTCAAAGGGAGCATCCCTTGCCTCGAGTGCCCGAAGGTTTTCCGCTACCTGAACACGATGCTGAGGCATTTCAACGCGGAGCACAGCAACAACAACGTCATCTGCGACTACTGCGGCCGCGGGTTCCGAAGCAGCACCAACCTCAAGACTCACCTCCAGAACGTTCACATCGGTTGCTGCGAATGCACCATCTGCCACGCCAAGTTCAAGAACCAGTCTGTTCTGGTGCGGCACATGGCGAAGAGTCACGACGTGAAGAGTTTCAAGTGCGGCCTCTGTGCGGAGATGCTGGAGTCTGAGTATCAGAGGAAGACGCATCTCATTAAGGTGCACGGGATCGGGCATAAGTGCGAGTTTTGCGGGAAGATGTTCACCAAACACTCTTTTATGGACTCCCATGTGAGGCGAACGCATCTCAAAGAGAAGAACGTGTCGTGTTCGATTTGCAACGACAAGTTTTTCGACAATCATCTGCTGCGGATGCATATGGTGAAGCATGATGGTGAGAGGAAGTACAAGTGTGAAATGTGCGGGAAAGCGTTTCTCAGGCAGAAAAACTTGCGTACACACATGGACACACATAAGAAATACGGTTTTGTGCAATGA
- Protein Sequence
- MVTANELRRRNLQTLFNNTSVLPFKWRGKYLCFFCGIHKENYSDLKRHTRTHIPCSLTDRAMKLMKGQESETKIDVSNIICNVCSMSFVNTDDLLSHLITTHNLSYNRHVSLTLASYRLADLKCLVCGEYFKMFVNLVRHMNLEHPENCFQCDICHQNFNKKRDLSHHLRINHKDEYNCSKCSQQFSCFSKLLQHKMKEHSSSCNVCFQTFPTYQKRLSHMKREHDVEDGGECGFCNRKFYAKHTFLDHATKCKASQPKDETPIVIDEEERGQNLKDLRESIAHVINMTTAMPFKFFHSKFRCFYCPKDFTKCSDLRNHTTTEHPICDTTFKAMKLRGRSDGVKIKVDTSSLYCKICFERFDDFVNSVNHLEIEHKTVIKKCFDVFQPFSLIHDKFPCPFCSEEFRYFRLLLNHVSAGHSGNEYICTFCGKSFRTYPNLRAHVSRYHSTNSFVCSICNLGFPTANGLKLHMAKDHGTKVFNCQQCSDKFVSQYQMMRHILKVHDGGHKCSYCGLAFIKYSYKINHIRRLHLKEKNVQCALCNERFFDGNRLKLHMVRHVGERLFRCDHCGKKFLRKRNLRGHVALHLKNDNETPAPTVDRITSGRRRRNLKTLFDNTTIIPFKWRGCSICFYCSVPVADYTEFRKHTKSHGVCNINSHAMRKVKGNGLSVKVDVSEIACEICERPFKNLQVIVEHLINEHNLKYDKEIYSEIEEYRLVDLRCVQCDQQFVSFTHLVSHANKHHPLNNYVCDHCGRQFSKKRDMKGHLNYYHRLGGYVCEQCGLECKSYFKLKAHMAHAHLTRCHICGKKFKFLNRLFHHVKLEHPSDENRTCSFCMKEFHSTMGLKVHMFKCKVRSLSTVESDVAIPETKDSLNQSRTHEQIVRIRQNIACVLNMSTAIPFRFRVKFSCFYCSLKIGDYEVLKQHTRTEHPVCDVKMKALKTCKGKRTFVRVDIASLACKLCSLPMPDLKHFIEHAISAHDADYDKSVSLETCFEPYRLVKGSIPCLECPKVFRYLNTMLRHFNAEHSNNNVICDYCGRGFRSSTNLKTHLQNVHIGCCECTICHAKFKNQSVLVRHMAKSHDVKSFKCGLCAEMLESEYQRKTHLIKVHGIGHKCEFCGKMFTKHSFMDSHVRRTHLKEKNVSCSICNDKFFDNHLLRMHMVKHDGERKYKCEMCGKAFLRQKNLRTHMDTHKKYGFVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -