Cleg000737.1
Basic Information
- Insect
- Chesias legatella
- Gene Symbol
- -
- Assembly
- GCA_947359385.1
- Location
- OX375773.1:1399215-1403460[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0021 0.12 12.9 2.6 2 23 18 39 17 39 0.92 2 22 0.19 11 6.8 4.9 1 23 67 89 67 89 0.98 3 22 1.7e-05 0.00095 19.5 0.6 2 23 112 133 111 133 0.98 4 22 0.002 0.11 13.0 0.1 2 23 139 161 139 161 0.94 5 22 0.001 0.058 13.9 2.9 1 23 261 283 261 283 0.99 6 22 0.00015 0.0083 16.6 1.0 1 23 289 311 289 311 0.97 7 22 0.00016 0.0092 16.4 1.9 2 23 320 341 319 341 0.98 8 22 1.5e-05 0.00087 19.7 1.6 1 23 347 369 347 369 0.97 9 22 1.1e-05 0.00063 20.1 7.7 1 23 375 397 375 397 0.99 10 22 8.6e-07 4.9e-05 23.6 2.6 1 23 403 425 403 425 0.97 11 22 3.4e-05 0.0019 18.6 1.3 1 23 431 453 431 453 0.99 12 22 2.6e-06 0.00015 22.1 0.3 1 21 458 478 458 481 0.89 13 22 1.4e-05 0.0008 19.8 0.5 1 23 487 510 487 510 0.98 14 22 0.00016 0.0089 16.5 2.9 1 23 517 539 517 539 0.97 15 22 0.012 0.7 10.5 1.1 1 23 546 569 546 569 0.82 16 22 0.015 0.87 10.2 7.5 1 23 576 598 576 599 0.96 17 22 0.0014 0.081 13.5 1.2 2 21 603 622 602 623 0.94 18 22 0.0012 0.066 13.7 3.1 2 23 624 645 623 645 0.97 19 22 0.018 1 10.0 4.1 1 23 651 674 651 674 0.97 20 22 0.00095 0.054 14.0 0.9 2 20 678 696 678 700 0.93 21 22 0.011 0.64 10.6 0.6 2 20 705 723 704 725 0.92 22 22 0.067 3.8 8.2 8.7 2 23 732 753 731 754 0.95
Sequence Information
- Coding Sequence
- ATGGATTCCGCCGGGATCTTCGTTGTCAGATTGGAGAGACACAAATTGATCCGATGTAAAAAATGCCATAAAATATTAATTGACAAAGATCACCTTGAGAGGCATAATGAATGGCACGATTTGGAGGAACGACTGGCTCGCCCGGGAGTCATGGAACATATGGAGAGTGCCCGAGTGGTACTAGATCGTGTCATAATATACCGATGCACCAGCTGCACCCGAGGATTCCTTAACTATTTCCATCTGAATGATCATCAAAAGCAACACACCAAAAAGAATAATACAAGCCCCAACGTGCCAGAAGAGAGCAACAACAACGATTTAAAGCCGAACAAATGCGACGAATGCGGTCTGAGATTCGTCGAGAAATCAACTCTCACCACACACCTTAAAGTCCACGAACCATTTCCCAACGTGTGCAACTTGTGCGGCGTCGGTTTCTATCAGAAGAAGGACCTCGAGTACCACGGCAGACTGGTACACCCGACCGCGACAGATTGGAAGCCAGTAATCAATTACACCGGACGGAAAATCAAATCGGAATTCGCAGTCGAACCTCCCCCCCTGCCCTCCGAGTCGGAGGCCGACGATTCGGACGCTGATCGTAATTACAAACCCAAAACCAGCACACGGGCCAAACCGAGACTCAAAGCGCAACTCGTGTTCCGAAACTCCAAAGTGAAACGTGGAAGTGGAACCAGTGATAAAGTTGTAGCGAAAAGTAAAAAGAAAGTAAAACGCGAAAATAAAGAAAATTTGTTTGTTAACGAAGGTCGAAAATATGAGTGCCCGCACTGCGGACAGATATGCCGAACTAAACTCCTGTATCTGTCCCATGTGAACACACACACGGGCGAGCTGAGTCATGTGTGCGACCGATGCCCGCGGGCATTCTCCACTAGAGCGTTCCTGATAGTGCACAAGCAGACGCACGGCCTCGCCGCAGATGCTTCCAGCAAATGTGGAGTGTGCCACAAAGTGATGCGCTCCAAATCAGGTCTCCAGACTCACATGTTGACCCACACGGGCGAGAGACCCCACTCGTGTCGACTGTGCCCGCTGAAGTTCAGCCAGCGGGGATCTCTCAGAGTCCACATGAGAATACACGACAACGTGTTCAGATTCCAGTGCAAACACTGCCAGAAACAATTCAGAGAGAAACACGGGTTGACAAACCACATGCGCACGCACACGGGCGAGAGGCCGCACTGCTGTCCGTATTGCGGGAAGGCTTTCGCGGACGCGTCCGCTTTCAAGCGGCACAAGCGCATCCACACCGGCGAGAAGCCGTACCGGTGCGCGCTCTGCCCCAAGGCGTTCAGCGACTGCAGCGCTTACATCGTGCACAAGCGGCGGCACGAGGGCGCGCGCTTCGCCTGCCCCCTCTGCGGGAAGACCTTCACCTCCAGGAACAATCTCACCACCCACACCGGGGCGGTCCACGAGAGAATCTACAAATACCAGTGCGCGCATTGCGCCCGAAATTTCGCCAACAAGGGTTACCTCATCGCTCACATCAAAACCGTCCACGAGCCCCAAATCAAAAGGTACCGATGCCAAATATGCGATAAGACATTTTTCACTAAACAAAATCGTAATAAACACGCGTTGAATCACGAGGTTCTCAGCAGAGATCACGCGTGCGAGTACTGCGGGATGACGTTCAAGACGAAAACCTCTAGGGACGGTCACTTGGTGCGACTTCACGACAGACCAGATCACAAATACGAATGTGATCACTGCCACTCCAAGTTTGTGTTCAAAGATGACATATATAAACATATTAGAAGGCACCACATTGCAATTCAGTGTCCTAAATGCAAGAGATACGTTTCCAACTCGTCGGAGCTGAGGGACCATCAGTGTGTGAAGTGTACGGTATGCGATAGACATTTCAGAAGTAAACAGCTAATGGAGGAGCATTCGAGACGTCACTTCAAAACTAAGATACACAAGTGTGTAGAGTGTCAGAGACCGTTTCAAGGTCAGAAGTCACTCAATTCCCACGTGCAGAGATGTCACGTTGAACGTTACTGCGATAAGTGTGGACGGTCGTTCAAGAAGAAGAATCTGCTGGTGTTGCATATATGGTCGAAGCACATGATAGGTTTGTACTGCAGTATATGTATGAGGAGGTTCTTCAGGGAGTCCGACCTGAAACGCCATAAAGTTACCTGTTCAGTCGCACGAGTCAAATGTGACATCTGTGGGTGCGAGTGTCAAACTAAATTACATCTGAAACGACATTTACTTAAACACCACAAACCAAATAACGGTCACTAG
- Protein Sequence
- MDSAGIFVVRLERHKLIRCKKCHKILIDKDHLERHNEWHDLEERLARPGVMEHMESARVVLDRVIIYRCTSCTRGFLNYFHLNDHQKQHTKKNNTSPNVPEESNNNDLKPNKCDECGLRFVEKSTLTTHLKVHEPFPNVCNLCGVGFYQKKDLEYHGRLVHPTATDWKPVINYTGRKIKSEFAVEPPPLPSESEADDSDADRNYKPKTSTRAKPRLKAQLVFRNSKVKRGSGTSDKVVAKSKKKVKRENKENLFVNEGRKYECPHCGQICRTKLLYLSHVNTHTGELSHVCDRCPRAFSTRAFLIVHKQTHGLAADASSKCGVCHKVMRSKSGLQTHMLTHTGERPHSCRLCPLKFSQRGSLRVHMRIHDNVFRFQCKHCQKQFREKHGLTNHMRTHTGERPHCCPYCGKAFADASAFKRHKRIHTGEKPYRCALCPKAFSDCSAYIVHKRRHEGARFACPLCGKTFTSRNNLTTHTGAVHERIYKYQCAHCARNFANKGYLIAHIKTVHEPQIKRYRCQICDKTFFTKQNRNKHALNHEVLSRDHACEYCGMTFKTKTSRDGHLVRLHDRPDHKYECDHCHSKFVFKDDIYKHIRRHHIAIQCPKCKRYVSNSSELRDHQCVKCTVCDRHFRSKQLMEEHSRRHFKTKIHKCVECQRPFQGQKSLNSHVQRCHVERYCDKCGRSFKKKNLLVLHIWSKHMIGLYCSICMRRFFRESDLKRHKVTCSVARVKCDICGCECQTKLHLKRHLLKHHKPNNGH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -